CRISPRone

CRISPRone report for GCA_004370995.1_ASM437099v1

♦ Seq 1: RWLZ01000017.1 Pseudomonas aeruginosa strain 4084334344 IPC1519_17.1, whole genome shotgun sequence

⇒Summary: seq-len = 68044 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 321-588 bp Zoom in on locus 1 x5 CRISPR array Location: 321-588 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 321-588 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 321-588 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWLZ01000021.1 Pseudomonas aeruginosa strain 4084334344 IPC1519_21.1, whole genome shotgun sequence

⇒Summary: seq-len = 11727 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1556-11333 bp Zoom in on locus 1 x2 x19 CRISPR array Location: 1556-1644 bp Num of repeats: 2 Spacers: s1-s1 CRISPR array Location: 1556-1644 bp Num of repeats: 2 Spacers: s1-s1 Gene: cd09739:cas6f Type: other Location: 1827-2390 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 2394-3422 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 3433-4416 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4403-5707 bp Gene: COG1203:cas3 Type: Type-I Location: 5765-8995 bp Gene: cd09718:cas1 Type: universal Location: 8992-9966 bp CRISPR array Location: 10227-11333 bp Num of repeats: 19 Spacers: s2-s19 CRISPR array Location: 10227-11333 bp Num of repeats: 19 Spacers: s2-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1556-1644 bp]: array | spacers
           [Locus range 10227-11333 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RWLZ01000001.1 Pseudomonas aeruginosa strain 4084334344 IPC1519_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 1176281 bp; # of CRISPR array = 1; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 446791-447538 bp 2 Locus 2: 879602-890458 bp Zoom in on locus 1 x13 Zoom in on locus 2 CRISPR array Location: 446791-447538 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 446791-447538 bp Num of repeats: 13 Spacers: s1-s12 Gene: cls000170:cas4 Type: Type-I Location: 879602-881146 bp Gene: unk Type: unknown Location: 882230-882409 bp Gene: pfam00078:RT Type: other Location: 883141-884409 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 889589-890458 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 446791-447538 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RWLZ01000018.1 Pseudomonas aeruginosa strain 4084334344 IPC1519_18.1, whole genome shotgun sequence

⇒Summary: seq-len = 28881 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 28355-28565 bp Zoom in on locus 1 x4 CRISPR array Location: 28355-28565 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 28355-28565 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 28355-28565 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)