CRISPRone

CRISPRone report for GCA_004371225.1_ASM437122v1

♦ Seq 1: RWNB01000025.1 Pseudomonas aeruginosa strain 5054408350-20 IPC1489_25.1, whole genome shotgun sequence

⇒Summary: seq-len = 38461 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 303-9953 bp Zoom in on locus 1 x8 x11 CRISPR array Location: 303-751 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 303-751 bp Num of repeats: 8 Spacers: s1-s7 Gene: cd09739:cas6f Type: other Location: 935-1498 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 1502-2530 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 2541-3524 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 3511-4815 bp Gene: COG1203:cas3 Type: Type-I Location: 4873-8103 bp Gene: cd09718:cas1 Type: universal Location: 8100-9074 bp CRISPR array Location: 9326-9953 bp Num of repeats: 11 Spacers: s8-s17 CRISPR array Location: 9326-9953 bp Num of repeats: 11 Spacers: s8-s17 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 303-751 bp]: array | spacers
           [Locus range 9326-9953 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWNB01000020.1 Pseudomonas aeruginosa strain 5054408350-20 IPC1489_20.1, whole genome shotgun sequence

⇒Summary: seq-len = 88950 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 87453-88622 bp Zoom in on locus 1 x20 CRISPR array Location: 87453-88622 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 87453-88622 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 87453-88622 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)