CRISPRone

CRISPRone report for GCA_004371435.1_ASM437143v1

♦ Seq 1: RWNX01000002.1 Pseudomonas aeruginosa strain 6091 IPC1338_2.1, whole genome shotgun sequence

⇒Summary: seq-len = 456603 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 226962-237196 bp Zoom in on locus 1 x15 x12 CRISPR array Location: 226962-227844 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 226962-227844 bp Num of repeats: 15 Spacers: s1-s14 Gene: pfam09707:cas2 Type: universal Location: 227909-228208 bp Gene: cd09719:cas1 Type: universal Location: 228205-228516 bp Gene: pfam08798:cas6e Type: other Location: 228543-229082 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 229129-229791 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 229793-230935 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 230945-231475 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 231472-233040 bp Gene: cd09641:cas3HD Type: Type-I Location: 233043-235724 bp CRISPR array Location: 236497-237196 bp Num of repeats: 12 Spacers: s15-s25 CRISPR array Location: 236497-237196 bp Num of repeats: 12 Spacers: s15-s25 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 226962-227844 bp]: array | spacers
           [Locus range 236497-237196 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWNX01000018.1 Pseudomonas aeruginosa strain 6091 IPC1338_18.1, whole genome shotgun sequence

⇒Summary: seq-len = 113061 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69468-79907 bp Zoom in on locus 1 x19 x13 CRISPR array Location: 69468-70576 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 69468-70576 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09739:cas6f Type: other Location: 70759-71322 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 71326-72354 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 72365-73348 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 73335-74639 bp Gene: COG1203:cas3 Type: Type-I Location: 74697-77927 bp Gene: cd09718:cas1 Type: universal Location: 77924-78898 bp CRISPR array Location: 79159-79907 bp Num of repeats: 13 Spacers: s19-s30 CRISPR array Location: 79159-79907 bp Num of repeats: 13 Spacers: s19-s30 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 69468-70576 bp]: array | spacers
           [Locus range 79159-79907 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)