CRISPRone

CRISPRone report for GCA_004371505.1_ASM437150v1

♦ Seq 1: RWOC01000002.1 Pseudomonas aeruginosa strain 6086.2 IPC1333_2.1, whole genome shotgun sequence

⇒Summary: seq-len = 849798 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 411253-412420 bp Zoom in on locus 1 x20 CRISPR array Location: 411253-412420 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 411253-412420 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 411253-412420 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWOC01000017.1 Pseudomonas aeruginosa strain 6086.2 IPC1333_17.1, whole genome shotgun sequence

⇒Summary: seq-len = 48497 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38729-48012 bp Zoom in on locus 1 x7 x2 x3 CRISPR array Location: 38729-39118 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 38729-39118 bp Num of repeats: 7 Spacers: s1-s6 Gene: cd09739:cas6f Type: other Location: 39301-39864 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39868-40896 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40907-41890 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41877-43181 bp Gene: COG1203:cas3 Type: Type-I Location: 43239-46469 bp Gene: cd09718:cas1 Type: universal Location: 46466-47440 bp CRISPR array Location: 47705-47792 bp Num of repeats: 2 Spacers: s7-s7 CRISPR array Location: 47705-47792 bp Num of repeats: 2 Spacers: s7-s7 CRISPR array Location: 47865-48012 bp Num of repeats: 3 Spacers: s8-s9 CRISPR array Location: 47865-48012 bp Num of repeats: 3 Spacers: s8-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38729-39118 bp]: array | spacers
           [Locus range 47705-47792 bp]: array | spacers
           [Locus range 47865-48012 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)