CRISPRone

CRISPRone report for GCA_004371555.1_ASM437155v1

♦ Seq 1: RWOG01000018.1 Pseudomonas aeruginosa strain 6003 IPC1329_18.1, whole genome shotgun sequence

⇒Summary: seq-len = 49433 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38381-48920 bp Zoom in on locus 1 x18 x10 CRISPR array Location: 38381-39429 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 38381-39429 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09739:cas6f Type: other Location: 39612-40175 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40179-41207 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41218-42201 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42188-43489 bp Gene: COG1203:cas3 Type: Type-I Location: 43900-47130 bp Gene: cd09718:cas1 Type: universal Location: 47127-48101 bp CRISPR array Location: 48353-48920 bp Num of repeats: 10 Spacers: s18-s26 CRISPR array Location: 48353-48920 bp Num of repeats: 10 Spacers: s18-s26 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38381-39429 bp]: array | spacers
           [Locus range 48353-48920 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWOG01000012.1 Pseudomonas aeruginosa strain 6003 IPC1329_12.1, whole genome shotgun sequence

⇒Summary: seq-len = 209656 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 208393-209141 bp Zoom in on locus 1 x13 CRISPR array Location: 208393-209141 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 208393-209141 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 208393-209141 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)