CRISPRone

CRISPRone report for GCA_004371715.1_ASM437171v1

♦ Seq 1: RWOR01000032.1 Pseudomonas aeruginosa strain 5995 IPC1318_32.1, whole genome shotgun sequence

⇒Summary: seq-len = 47189 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 36731-46849 bp Zoom in on locus 1 x15 x10 CRISPR array Location: 36731-37599 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 36731-37599 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09739:cas6f Type: other Location: 37782-38345 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 38349-39377 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39388-40371 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 40358-41662 bp Gene: COG1203:cas3 Type: Type-I Location: 41720-44950 bp Gene: cd09718:cas1 Type: universal Location: 44947-45921 bp CRISPR array Location: 46282-46849 bp Num of repeats: 10 Spacers: s15-s23 CRISPR array Location: 46282-46849 bp Num of repeats: 10 Spacers: s15-s23 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 36731-37599 bp]: array | spacers
           [Locus range 46282-46849 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWOR01000047.1 Pseudomonas aeruginosa strain 5995 IPC1318_47.1, whole genome shotgun sequence

⇒Summary: seq-len = 1924 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 708-1576 bp Zoom in on locus 1 x15 CRISPR array Location: 708-1576 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 708-1576 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 708-1576 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RWOR01000019.1 Pseudomonas aeruginosa strain 5995 IPC1318_19.1, whole genome shotgun sequence

⇒Summary: seq-len = 112079 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 709-2661 bp Zoom in on locus 1 x33 CRISPR array Location: 709-2661 bp Num of repeats: 33 Spacers: s1-s32 CRISPR array Location: 709-2661 bp Num of repeats: 33 Spacers: s1-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 709-2661 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)