CRISPRone

CRISPRone report for GCA_004371855.1_ASM437185v1

♦ Seq 1: RWOX01000002.1 Pseudomonas aeruginosa strain 5990.2 IPC1312_2.1, whole genome shotgun sequence

⇒Summary: seq-len = 607927 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 200065-200813 bp Zoom in on locus 1 x13 CRISPR array Location: 200065-200813 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 200065-200813 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 200065-200813 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWOX01000018.1 Pseudomonas aeruginosa strain 5990.2 IPC1312_18.1, whole genome shotgun sequence

⇒Summary: seq-len = 81284 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 32510-43194 bp Zoom in on locus 1 x17 x19 CRISPR array Location: 32510-33500 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 32510-33500 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09718:cas1 Type: universal Location: 33764-34738 bp Gene: COG1203:cas3 Type: Type-I Location: 34735-37965 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 38023-39327 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 39314-40297 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40308-41336 bp Gene: cd09739:cas6f Type: other Location: 41340-41903 bp CRISPR array Location: 42087-43194 bp Num of repeats: 19 Spacers: s17-s34 CRISPR array Location: 42087-43194 bp Num of repeats: 19 Spacers: s17-s34 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 32510-33500 bp]: array | spacers
           [Locus range 42087-43194 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RWOX01000009.1 Pseudomonas aeruginosa strain 5990.2 IPC1312_9.1, whole genome shotgun sequence

⇒Summary: seq-len = 224597 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5875-16449 bp Zoom in on locus 1 x12 x11 CRISPR array Location: 5875-6576 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 5875-6576 bp Num of repeats: 12 Spacers: s1-s11 Gene: cd09641:cas3HD Type: Type-I Location: 7351-10032 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 10035-11603 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 11600-12130 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 12140-13282 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 13284-13946 bp Gene: pfam08798:cas6e Type: other Location: 13921-14532 bp Gene: cd09719:cas1 Type: universal Location: 14559-15449 bp Gene: pfam09707:cas2 Type: universal Location: 15446-15745 bp CRISPR array Location: 15810-16449 bp Num of repeats: 11 Spacers: s12-s21 CRISPR array Location: 15810-16449 bp Num of repeats: 11 Spacers: s12-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 5875-6576 bp]: array | spacers
           [Locus range 15810-16449 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)