CRISPRone

CRISPRone report for GCA_004371865.1_ASM437186v1

♦ Seq 1: RWOZ01000023.1 Pseudomonas aeruginosa strain 5989 IPC1310_23.1, whole genome shotgun sequence

⇒Summary: seq-len = 49512 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38400-48999 bp Zoom in on locus 1 x19 x10 CRISPR array Location: 38400-39508 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 38400-39508 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09739:cas6f Type: other Location: 39691-40254 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40258-41286 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41297-42280 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42267-43568 bp Gene: COG1203:cas3 Type: Type-I Location: 43979-47209 bp Gene: cd09718:cas1 Type: universal Location: 47206-48180 bp CRISPR array Location: 48432-48999 bp Num of repeats: 10 Spacers: s19-s27 CRISPR array Location: 48432-48999 bp Num of repeats: 10 Spacers: s19-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38400-39508 bp]: array | spacers
           [Locus range 48432-48999 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWOZ01000012.1 Pseudomonas aeruginosa strain 5989 IPC1310_12.1, whole genome shotgun sequence

⇒Summary: seq-len = 209754 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 208431-209239 bp Zoom in on locus 1 x14 CRISPR array Location: 208431-209239 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 208431-209239 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 208431-209239 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)