CRISPRone

CRISPRone report for GCA_004371955.1_ASM437195v1

♦ Seq 1: RWPI01000017.1 Pseudomonas aeruginosa strain PA-CL542a IPC629_17.1, whole genome shotgun sequence

⇒Summary: seq-len = 74611 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 376-10211 bp Zoom in on locus 1 x5 x11 CRISPR array Location: 376-644 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 376-644 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09718:cas1 Type: universal Location: 904-1878 bp Gene: COG1203:cas3 Type: Type-I Location: 1875-5111 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5522-6823 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6810-7793 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7804-8832 bp Gene: cd09739:cas6f Type: other Location: 8836-9399 bp CRISPR array Location: 9584-10211 bp Num of repeats: 11 Spacers: s5-s14 CRISPR array Location: 9584-10211 bp Num of repeats: 11 Spacers: s5-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 376-644 bp]: array | spacers
           [Locus range 9584-10211 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWPI01000021.1 Pseudomonas aeruginosa strain PA-CL542a IPC629_21.1, whole genome shotgun sequence

⇒Summary: seq-len = 2597 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1173-2282 bp Zoom in on locus 1 x19 CRISPR array Location: 1173-2282 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 1173-2282 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1173-2282 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RWPI01000010.1 Pseudomonas aeruginosa strain PA-CL542a IPC629_10.1, whole genome shotgun sequence

⇒Summary: seq-len = 314211 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 56852-62212 bp Zoom in on locus 1 Gene: cls001593:casR Type: Type-I Location: 56852-57169 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 57281-59671 bp Gene: unk Type: unknown Location: 59736-61175 bp Gene: COG4804:PD-DExK Type: other Location: 61172-62212 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RWPI01000001.1 Pseudomonas aeruginosa strain PA-CL542a IPC629_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 1594899 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 929789-930536 bp Zoom in on locus 1 x13 CRISPR array Location: 929789-930536 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 929789-930536 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 929789-930536 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)