CRISPRone

CRISPRone report for GCA_004372025.1_ASM437202v1

♦ Seq 1: RWOH01000001.1 Pseudomonas aeruginosa strain 6001 IPC1328_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 904032 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 412064-413231 bp Zoom in on locus 1 x20 CRISPR array Location: 412064-413231 bp Num of repeats: 20 Spacers: s1-s19 CRISPR array Location: 412064-413231 bp Num of repeats: 20 Spacers: s1-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 412064-413231 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWOH01000016.1 Pseudomonas aeruginosa strain 6001 IPC1328_16.1, whole genome shotgun sequence

⇒Summary: seq-len = 77730 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29372-39750 bp Zoom in on locus 1 x16 x15 CRISPR array Location: 29372-30300 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 29372-30300 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09718:cas1 Type: universal Location: 30560-31534 bp Gene: COG1203:cas3 Type: Type-I Location: 31531-34761 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 34819-36123 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 36110-37093 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 37104-38132 bp Gene: cd09739:cas6f Type: other Location: 38136-38699 bp CRISPR array Location: 38883-39750 bp Num of repeats: 15 Spacers: s16-s29 CRISPR array Location: 38883-39750 bp Num of repeats: 15 Spacers: s16-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 29372-30300 bp]: array | spacers
           [Locus range 38883-39750 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)