CRISPRone

CRISPRone report for GCA_004372045.1_ASM437204v1

♦ Seq 1: RWOA01000003.1 Pseudomonas aeruginosa strain 6088 IPC1335_3.1, whole genome shotgun sequence

⇒Summary: seq-len = 589933 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 295816-307853 bp Zoom in on locus 1 x29 x18 CRISPR array Location: 295816-297554 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 295816-297554 bp Num of repeats: 29 Spacers: s1-s28 Gene: pfam09707:cas2 Type: universal Location: 297619-297918 bp Gene: cd09719:cas1 Type: universal Location: 297915-298805 bp Gene: pfam08798:cas6e Type: other Location: 298832-299371 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 299418-300080 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 300082-301224 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 301234-301764 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 301761-303329 bp Gene: cd09641:cas3HD Type: Type-I Location: 303332-306013 bp CRISPR array Location: 306788-307853 bp Num of repeats: 18 Spacers: s29-s45 CRISPR array Location: 306788-307853 bp Num of repeats: 18 Spacers: s29-s45 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 295816-297554 bp]: array | spacers
           [Locus range 306788-307853 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)