CRISPRone

CRISPRone report for GCA_004372135.1_ASM437213v1

♦ Seq 1: RWOY01000002.1 Pseudomonas aeruginosa strain 5990.1 IPC1311_2.1, whole genome shotgun sequence

⇒Summary: seq-len = 829188 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 619006-629458 bp Zoom in on locus 1 x10 x11 CRISPR array Location: 619006-619585 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 619006-619585 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09641:cas3HD Type: Type-I Location: 620360-623041 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 623044-624612 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 624609-625139 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 625149-626291 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 626293-626955 bp Gene: pfam08798:cas6e Type: other Location: 626930-627541 bp Gene: cd09719:cas1 Type: universal Location: 627568-628458 bp Gene: pfam09707:cas2 Type: universal Location: 628455-628754 bp CRISPR array Location: 628819-629458 bp Num of repeats: 11 Spacers: s10-s19 CRISPR array Location: 628819-629458 bp Num of repeats: 11 Spacers: s10-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 619006-619585 bp]: array | spacers
           [Locus range 628819-629458 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWOY01000007.1 Pseudomonas aeruginosa strain 5990.1 IPC1311_7.1, whole genome shotgun sequence

⇒Summary: seq-len = 361239 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 96231-97052 bp Zoom in on locus 1 Gene: cd09693:cas5 Type: Type-I Location: 96231-97052 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RWOY01000001.1 Pseudomonas aeruginosa strain 5990.1 IPC1311_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 894819 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 487342-488090 bp Zoom in on locus 1 x13 CRISPR array Location: 487342-488090 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 487342-488090 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 487342-488090 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RWOY01000018.1 Pseudomonas aeruginosa strain 5990.1 IPC1311_18.1, whole genome shotgun sequence

⇒Summary: seq-len = 74532 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 25862-36546 bp Zoom in on locus 1 x17 x19 CRISPR array Location: 25862-26852 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 25862-26852 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09718:cas1 Type: universal Location: 27116-28090 bp Gene: COG1203:cas3 Type: Type-I Location: 28087-31317 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 31375-32679 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 32666-33649 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 33660-34688 bp Gene: cd09739:cas6f Type: other Location: 34692-35255 bp CRISPR array Location: 35439-36546 bp Num of repeats: 19 Spacers: s17-s34 CRISPR array Location: 35439-36546 bp Num of repeats: 19 Spacers: s17-s34 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 25862-26852 bp]: array | spacers
           [Locus range 35439-36546 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)