CRISPRone

CRISPRone report for GCA_004372255.1_ASM437225v1

♦ Seq 1: RWPM01000010.1 Pseudomonas aeruginosa strain PA-CL529 IPC623_10.1, whole genome shotgun sequence

⇒Summary: seq-len = 429840 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 172260-177620 bp Zoom in on locus 1 Gene: cls001593:casR Type: Type-I Location: 172260-172577 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 172689-175079 bp Gene: unk Type: unknown Location: 175105-176583 bp Gene: COG4804:PD-DExK Type: other Location: 176580-177620 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWPM01000003.1 Pseudomonas aeruginosa strain PA-CL529 IPC623_3.1, whole genome shotgun sequence

⇒Summary: seq-len = 881066 bp; # of CRISPR array = 0; # of cas gene = 4  (type I, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 608979-626097 bp Zoom in on locus 1 Gene: COG1199:DinG Type: Subtype-IV-A Location: 608979-610010 bp Gene: pfam00078:RT Type: other Location: 610391-612109 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 616179-616499 bp Gene: mkCas0090:PD-DExK Type: other Location: 625372-626097 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RWPM01000026.1 Pseudomonas aeruginosa strain PA-CL529 IPC623_26.1, whole genome shotgun sequence

⇒Summary: seq-len = 2598 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1177-2286 bp Zoom in on locus 1 x19 CRISPR array Location: 1177-2286 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 1177-2286 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1177-2286 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RWPM01000013.1 Pseudomonas aeruginosa strain PA-CL529 IPC623_13.1, whole genome shotgun sequence

⇒Summary: seq-len = 121340 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 48887-58602 bp Zoom in on locus 1 x3 x11 CRISPR array Location: 48887-49035 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 48887-49035 bp Num of repeats: 3 Spacers: s1-s2 Gene: cd09718:cas1 Type: universal Location: 49295-50269 bp Gene: COG1203:cas3 Type: Type-I Location: 50266-53502 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 53913-55214 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 55201-56184 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 56195-57223 bp Gene: cd09739:cas6f Type: other Location: 57227-57790 bp CRISPR array Location: 57975-58602 bp Num of repeats: 11 Spacers: s3-s12 CRISPR array Location: 57975-58602 bp Num of repeats: 11 Spacers: s3-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 48887-49035 bp]: array | spacers
           [Locus range 57975-58602 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: RWPM01000001.1 Pseudomonas aeruginosa strain PA-CL529 IPC623_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 1110037 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 415393-416140 bp Zoom in on locus 1 x13 CRISPR array Location: 415393-416140 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 415393-416140 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 415393-416140 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)