CRISPRone

CRISPRone report for GCA_004372485.1_ASM437248v1

♦ Seq 1: RWQH01000014.1 Pseudomonas aeruginosa strain PA-CL506b IPC600_14.1, whole genome shotgun sequence

⇒Summary: seq-len = 196077 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 172536-177896 bp Zoom in on locus 1 Gene: cls001593:casR Type: Type-I Location: 172536-172853 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 172965-175355 bp Gene: unk Type: unknown Location: 175381-176859 bp Gene: COG4804:PD-DExK Type: other Location: 176856-177896 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWQH01000031.1 Pseudomonas aeruginosa strain PA-CL506b IPC600_31.1, whole genome shotgun sequence

⇒Summary: seq-len = 2597 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1173-2282 bp Zoom in on locus 1 x19 CRISPR array Location: 1173-2282 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 1173-2282 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1173-2282 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RWQH01000017.1 Pseudomonas aeruginosa strain PA-CL506b IPC600_17.1, whole genome shotgun sequence

⇒Summary: seq-len = 74949 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 322-10157 bp Zoom in on locus 1 x5 x11 CRISPR array Location: 322-590 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 322-590 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09718:cas1 Type: universal Location: 850-1824 bp Gene: COG1203:cas3 Type: Type-I Location: 1821-5057 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5468-6769 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6756-7739 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7750-8778 bp Gene: cd09739:cas6f Type: other Location: 8782-9345 bp CRISPR array Location: 9530-10157 bp Num of repeats: 11 Spacers: s5-s14 CRISPR array Location: 9530-10157 bp Num of repeats: 11 Spacers: s5-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 322-590 bp]: array | spacers
           [Locus range 9530-10157 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RWQH01000001.1 Pseudomonas aeruginosa strain PA-CL506b IPC600_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 1442974 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 895752-896499 bp Zoom in on locus 1 x13 CRISPR array Location: 895752-896499 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 895752-896499 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 895752-896499 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)