CRISPRone

CRISPRone report for GCA_004372505.1_ASM437250v1

♦ Seq 1: RWQI01000008.1 Pseudomonas aeruginosa strain PA-CL505 IPC599_8.1, whole genome shotgun sequence

⇒Summary: seq-len = 355141 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 315-10150 bp Zoom in on locus 1 x5 x11 CRISPR array Location: 315-583 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 315-583 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09718:cas1 Type: universal Location: 843-1817 bp Gene: COG1203:cas3 Type: Type-I Location: 1814-5050 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5461-6762 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6749-7732 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7743-8771 bp Gene: cd09739:cas6f Type: other Location: 8775-9338 bp CRISPR array Location: 9523-10150 bp Num of repeats: 11 Spacers: s5-s14 CRISPR array Location: 9523-10150 bp Num of repeats: 11 Spacers: s5-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 315-583 bp]: array | spacers
           [Locus range 9523-10150 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWQI01000001.1 Pseudomonas aeruginosa strain PA-CL505 IPC599_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 1723252 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 895152-895899 bp Zoom in on locus 1 x13 CRISPR array Location: 895152-895899 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 895152-895899 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 895152-895899 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RWQI01000012.1 Pseudomonas aeruginosa strain PA-CL505 IPC599_12.1, whole genome shotgun sequence

⇒Summary: seq-len = 77142 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15185-20545 bp Zoom in on locus 1 Gene: COG4804:PD-DExK Type: other Location: 15185-16225 bp Gene: unk Type: unknown Location: 16222-17700 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 17726-20116 bp Gene: cls001593:casR Type: Type-I Location: 20228-20545 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RWQI01000018.1 Pseudomonas aeruginosa strain PA-CL505 IPC599_18.1, whole genome shotgun sequence

⇒Summary: seq-len = 2597 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1173-2282 bp Zoom in on locus 1 x19 CRISPR array Location: 1173-2282 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 1173-2282 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1173-2282 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)