CRISPRone

CRISPRone report for GCA_004372525.1_ASM437252v1

♦ Seq 1: RWQJ01000023.1 Pseudomonas aeruginosa strain PA-CL504 IPC598_23.1, whole genome shotgun sequence

⇒Summary: seq-len = 2597 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1173-2282 bp Zoom in on locus 1 x19 CRISPR array Location: 1173-2282 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 1173-2282 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1173-2282 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWQJ01000017.1 Pseudomonas aeruginosa strain PA-CL504 IPC598_17.1, whole genome shotgun sequence

⇒Summary: seq-len = 74817 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 353-10188 bp Zoom in on locus 1 x5 x11 CRISPR array Location: 353-621 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 353-621 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09718:cas1 Type: universal Location: 881-1855 bp Gene: COG1203:cas3 Type: Type-I Location: 1852-5088 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5499-6800 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6787-7770 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7781-8809 bp Gene: cd09739:cas6f Type: other Location: 8813-9376 bp CRISPR array Location: 9561-10188 bp Num of repeats: 11 Spacers: s5-s14 CRISPR array Location: 9561-10188 bp Num of repeats: 11 Spacers: s5-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 353-621 bp]: array | spacers
           [Locus range 9561-10188 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RWQJ01000007.1 Pseudomonas aeruginosa strain PA-CL504 IPC598_7.1, whole genome shotgun sequence

⇒Summary: seq-len = 431299 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 173744-179104 bp Zoom in on locus 1 Gene: cls001593:casR Type: Type-I Location: 173744-174061 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 174173-176563 bp Gene: unk Type: unknown Location: 176589-178067 bp Gene: COG4804:PD-DExK Type: other Location: 178064-179104 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RWQJ01000001.1 Pseudomonas aeruginosa strain PA-CL504 IPC598_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 1554067 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 440069-440816 bp Zoom in on locus 1 x13 CRISPR array Location: 440069-440816 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 440069-440816 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 440069-440816 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)