CRISPRone

CRISPRone report for GCA_004372535.1_ASM437253v1

♦ Seq 1: RWQK01000013.1 Pseudomonas aeruginosa strain PA-CL502 IPC597_13.1, whole genome shotgun sequence

⇒Summary: seq-len = 193051 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 172581-177941 bp Zoom in on locus 1 Gene: cls001593:casR Type: Type-I Location: 172581-172898 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 173010-175400 bp Gene: unk Type: unknown Location: 175426-176904 bp Gene: COG4804:PD-DExK Type: other Location: 176901-177941 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWQK01000002.1 Pseudomonas aeruginosa strain PA-CL502 IPC597_2.1, whole genome shotgun sequence

⇒Summary: seq-len = 1123579 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 897782-898529 bp Zoom in on locus 1 x13 CRISPR array Location: 897782-898529 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 897782-898529 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 897782-898529 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RWQK01000016.1 Pseudomonas aeruginosa strain PA-CL502 IPC597_16.1, whole genome shotgun sequence

⇒Summary: seq-len = 73022 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 315-10150 bp Zoom in on locus 1 x5 x11 CRISPR array Location: 315-583 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 315-583 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09718:cas1 Type: universal Location: 843-1817 bp Gene: COG1203:cas3 Type: Type-I Location: 1814-5050 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5461-6762 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6749-7732 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7743-8771 bp Gene: cd09739:cas6f Type: other Location: 8775-9338 bp CRISPR array Location: 9523-10150 bp Num of repeats: 11 Spacers: s5-s14 CRISPR array Location: 9523-10150 bp Num of repeats: 11 Spacers: s5-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 315-583 bp]: array | spacers
           [Locus range 9523-10150 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RWQK01000023.1 Pseudomonas aeruginosa strain PA-CL502 IPC597_23.1, whole genome shotgun sequence

⇒Summary: seq-len = 2597 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1195-2304 bp Zoom in on locus 1 x19 CRISPR array Location: 1195-2304 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 1195-2304 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1195-2304 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)