CRISPRone

CRISPRone report for GCA_004372675.1_ASM437267v1

♦ Seq 1: RWPO01000030.1 Pseudomonas aeruginosa strain PA-CL527 IPC621_30.1, whole genome shotgun sequence

⇒Summary: seq-len = 2598 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1182-2291 bp Zoom in on locus 1 x19 CRISPR array Location: 1182-2291 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 1182-2291 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1182-2291 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWPO01000019.1 Pseudomonas aeruginosa strain PA-CL527 IPC621_19.1, whole genome shotgun sequence

⇒Summary: seq-len = 72171 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 316-10151 bp Zoom in on locus 1 x5 x11 CRISPR array Location: 316-584 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 316-584 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09718:cas1 Type: universal Location: 844-1818 bp Gene: COG1203:cas3 Type: Type-I Location: 1815-5051 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5462-6763 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6750-7733 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7744-8772 bp Gene: cd09739:cas6f Type: other Location: 8776-9339 bp CRISPR array Location: 9524-10151 bp Num of repeats: 11 Spacers: s5-s14 CRISPR array Location: 9524-10151 bp Num of repeats: 11 Spacers: s5-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 316-584 bp]: array | spacers
           [Locus range 9524-10151 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RWPO01000018.1 Pseudomonas aeruginosa strain PA-CL527 IPC621_18.1, whole genome shotgun sequence

⇒Summary: seq-len = 78473 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 18606-23966 bp Zoom in on locus 1 Gene: COG4804:PD-DExK Type: other Location: 18606-19646 bp Gene: unk Type: unknown Location: 19643-21121 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 21147-23537 bp Gene: cls001593:casR Type: Type-I Location: 23649-23966 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RWPO01000005.1 Pseudomonas aeruginosa strain PA-CL527 IPC621_5.1, whole genome shotgun sequence

⇒Summary: seq-len = 962520 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 546044-546792 bp Zoom in on locus 1 x13 CRISPR array Location: 546044-546792 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 546044-546792 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 546044-546792 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)