CRISPRone

CRISPRone report for GCA_004372695.1_ASM437269v1

♦ Seq 1: RWPN01000014.1 Pseudomonas aeruginosa strain PA-CL528 IPC622_14.1, whole genome shotgun sequence

⇒Summary: seq-len = 77933 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15867-21227 bp Zoom in on locus 1 Gene: COG4804:PD-DExK Type: other Location: 15867-16907 bp Gene: unk Type: unknown Location: 16904-18382 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 18408-20798 bp Gene: cls001593:casR Type: Type-I Location: 20910-21227 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWPN01000022.1 Pseudomonas aeruginosa strain PA-CL528 IPC622_22.1, whole genome shotgun sequence

⇒Summary: seq-len = 2598 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1173-2282 bp Zoom in on locus 1 x19 CRISPR array Location: 1173-2282 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 1173-2282 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1173-2282 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RWPN01000015.1 Pseudomonas aeruginosa strain PA-CL528 IPC622_15.1, whole genome shotgun sequence

⇒Summary: seq-len = 72901 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 357-10192 bp Zoom in on locus 1 x5 x11 CRISPR array Location: 357-625 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 357-625 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09718:cas1 Type: universal Location: 885-1859 bp Gene: COG1203:cas3 Type: Type-I Location: 1856-5092 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5503-6804 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6791-7774 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7785-8813 bp Gene: cd09739:cas6f Type: other Location: 8817-9380 bp CRISPR array Location: 9565-10192 bp Num of repeats: 11 Spacers: s5-s14 CRISPR array Location: 9565-10192 bp Num of repeats: 11 Spacers: s5-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 357-625 bp]: array | spacers
           [Locus range 9565-10192 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RWPN01000001.1 Pseudomonas aeruginosa strain PA-CL528 IPC622_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 1962507 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 892896-893643 bp Zoom in on locus 1 x13 CRISPR array Location: 892896-893643 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 892896-893643 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 892896-893643 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)