CRISPRone

CRISPRone report for GCA_004373125.1_ASM437312v1

♦ Seq 1: RWRI01000002.1 Pseudomonas aeruginosa strain PAC38A IPC172_2.1, whole genome shotgun sequence

⇒Summary: seq-len = 966266 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 207586-208214 bp Zoom in on locus 1 x11 CRISPR array Location: 207586-208214 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 207586-208214 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 207586-208214 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWRI01000013.1 Pseudomonas aeruginosa strain PAC38A IPC172_13.1, whole genome shotgun sequence

⇒Summary: seq-len = 118835 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21515-32841 bp Zoom in on locus 1 x22 x19 CRISPR array Location: 21515-22804 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 21515-22804 bp Num of repeats: 22 Spacers: s1-s21 Gene: cd09718:cas1 Type: universal Location: 23064-24038 bp Gene: COG1203:cas3 Type: Type-I Location: 24035-27265 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 27676-28977 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 28964-29947 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 29958-30986 bp Gene: cd09739:cas6f Type: other Location: 30990-31553 bp CRISPR array Location: 31738-32841 bp Num of repeats: 19 Spacers: s22-s39 CRISPR array Location: 31738-32841 bp Num of repeats: 19 Spacers: s22-s39 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 21515-22804 bp]: array | spacers
           [Locus range 31738-32841 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)