CRISPRone

CRISPRone report for GCA_004373195.1_ASM437319v1

♦ Seq 1: RWRO01000001.1 Pseudomonas aeruginosa strain PAC70B IPC166_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 2201156 bp; # of CRISPR array = 1; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1762340-1763567 bp 2 Locus 2: 2194089-2200135 bp Zoom in on locus 1 x21 Zoom in on locus 2 CRISPR array Location: 1762340-1763567 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 1762340-1763567 bp Num of repeats: 21 Spacers: s1-s20 Gene: cls000170:cas4 Type: Type-I Location: 2194089-2195633 bp Gene: unk Type: unknown Location: 2196717-2196896 bp Gene: pfam00078:RT Type: other Location: 2197628-2198344 bp Gene: unk Type: unknown Location: 2198388-2199053 bp Gene: unk Type: unknown Location: 2199242-2199550 bp Gene: pfam00078:RT Type: other Location: 2199602-2200135 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1762340-1763567 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWRO01000016.1 Pseudomonas aeruginosa strain PAC70B IPC166_16.1, whole genome shotgun sequence

⇒Summary: seq-len = 77377 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29456-39834 bp Zoom in on locus 1 x16 x15 CRISPR array Location: 29456-30384 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 29456-30384 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09718:cas1 Type: universal Location: 30644-31618 bp Gene: COG1203:cas3 Type: Type-I Location: 31615-34845 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 34903-36207 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 36194-37177 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 37188-38216 bp Gene: cd09739:cas6f Type: other Location: 38220-38783 bp CRISPR array Location: 38967-39834 bp Num of repeats: 15 Spacers: s16-s29 CRISPR array Location: 38967-39834 bp Num of repeats: 15 Spacers: s16-s29 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 29456-30384 bp]: array | spacers
           [Locus range 38967-39834 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)