CRISPRone

CRISPRone report for GCA_004373225.1_ASM437322v1

♦ Seq 1: RWRR01000015.1 Pseudomonas aeruginosa strain PAC31B IPC163_15.1, whole genome shotgun sequence

⇒Summary: seq-len = 75141 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 27220-37598 bp Zoom in on locus 1 x16 x15 CRISPR array Location: 27220-28148 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 27220-28148 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09718:cas1 Type: universal Location: 28408-29382 bp Gene: COG1203:cas3 Type: Type-I Location: 29379-32609 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 32667-33971 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 33958-34941 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 34952-35980 bp Gene: cd09739:cas6f Type: other Location: 35984-36547 bp CRISPR array Location: 36731-37598 bp Num of repeats: 15 Spacers: s16-s29 CRISPR array Location: 36731-37598 bp Num of repeats: 15 Spacers: s16-s29 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 27220-28148 bp]: array | spacers
           [Locus range 36731-37598 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWRR01000001.1 Pseudomonas aeruginosa strain PAC31B IPC163_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 1918655 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1401630-1402857 bp 2 Locus 2: 1833379-1845489 bp Zoom in on locus 1 x21 Zoom in on locus 2 CRISPR array Location: 1401630-1402857 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 1401630-1402857 bp Num of repeats: 21 Spacers: s1-s20 Gene: cls000170:cas4 Type: Type-I Location: 1833379-1834923 bp Gene: unk Type: unknown Location: 1836007-1836186 bp Gene: pfam00078:RT Type: other Location: 1836918-1837634 bp Gene: unk Type: unknown Location: 1837678-1838343 bp Gene: unk Type: unknown Location: 1838532-1838840 bp Gene: pfam00078:RT Type: other Location: 1838892-1839425 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 1844605-1845489 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1401630-1402857 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)