CRISPRone

CRISPRone report for GCA_004373235.1_ASM437323v1

♦ Seq 1: RWRP01000002.1 Pseudomonas aeruginosa strain PAC70A IPC165_2.1, whole genome shotgun sequence

⇒Summary: seq-len = 929113 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 412058-413285 bp 2 Locus 2: 843807-855426 bp Zoom in on locus 1 x21 Zoom in on locus 2 CRISPR array Location: 412058-413285 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 412058-413285 bp Num of repeats: 21 Spacers: s1-s20 Gene: cls000170:cas4 Type: Type-I Location: 843807-845351 bp Gene: unk Type: unknown Location: 846435-846614 bp Gene: pfam00078:RT Type: other Location: 847346-848062 bp Gene: unk Type: unknown Location: 848106-848771 bp Gene: unk Type: unknown Location: 848960-849268 bp Gene: pfam00078:RT Type: other Location: 849320-849853 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 854557-855426 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 412058-413285 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWRP01000016.1 Pseudomonas aeruginosa strain PAC70A IPC165_16.1, whole genome shotgun sequence

⇒Summary: seq-len = 69326 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21405-31783 bp Zoom in on locus 1 x16 x15 CRISPR array Location: 21405-22333 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 21405-22333 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09718:cas1 Type: universal Location: 22593-23567 bp Gene: COG1203:cas3 Type: Type-I Location: 23564-26794 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 26852-28156 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 28143-29126 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 29137-30165 bp Gene: cd09739:cas6f Type: other Location: 30169-30732 bp CRISPR array Location: 30916-31783 bp Num of repeats: 15 Spacers: s16-s29 CRISPR array Location: 30916-31783 bp Num of repeats: 15 Spacers: s16-s29 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 21405-22333 bp]: array | spacers
           [Locus range 30916-31783 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)