CRISPRone

CRISPRone report for GCA_004373475.1_ASM437347v1

♦ Seq 1: RWSL01000005.1 Pseudomonas aeruginosa strain PAC56A IPC142_5.1, whole genome shotgun sequence

⇒Summary: seq-len = 415047 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 413506-414612 bp Zoom in on locus 1 x19 CRISPR array Location: 413506-414612 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 413506-414612 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 413506-414612 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWSL01000021.1 Pseudomonas aeruginosa strain PAC56A IPC142_21.1, whole genome shotgun sequence

⇒Summary: seq-len = 49212 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 436-10864 bp Zoom in on locus 1 x9 x17 CRISPR array Location: 436-944 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 436-944 bp Num of repeats: 9 Spacers: s1-s8 Gene: cd09718:cas1 Type: universal Location: 1204-2178 bp Gene: COG1203:cas3 Type: Type-I Location: 2175-5405 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5816-7117 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7104-8087 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8098-9126 bp Gene: cd09739:cas6f Type: other Location: 9130-9693 bp CRISPR array Location: 9877-10864 bp Num of repeats: 17 Spacers: s9-s24 CRISPR array Location: 9877-10864 bp Num of repeats: 17 Spacers: s9-s24 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 436-944 bp]: array | spacers
           [Locus range 9877-10864 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)