CRISPRone

CRISPRone report for GCA_004373545.1_ASM437354v1

♦ Seq 1: RWSO01000026.1 Pseudomonas aeruginosa strain PAC15A IPC139_26.1, whole genome shotgun sequence

⇒Summary: seq-len = 66352 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1162-11936 bp Zoom in on locus 1 x18 x13 CRISPR array Location: 1162-2210 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 1162-2210 bp Num of repeats: 18 Spacers: s1-s17 Gene: cd09718:cas1 Type: universal Location: 2471-3445 bp Gene: COG1203:cas3 Type: Type-I Location: 3442-6672 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 7311-8429 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 8416-9399 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 9410-10438 bp Gene: cd09739:cas6f Type: other Location: 10442-11005 bp CRISPR array Location: 11189-11936 bp Num of repeats: 13 Spacers: s18-s29 CRISPR array Location: 11189-11936 bp Num of repeats: 13 Spacers: s18-s29 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1162-2210 bp]: array | spacers
           [Locus range 11189-11936 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWSO01000004.1 Pseudomonas aeruginosa strain PAC15A IPC139_4.1, whole genome shotgun sequence

⇒Summary: seq-len = 492451 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 796-1664 bp Zoom in on locus 1 x15 CRISPR array Location: 796-1664 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 796-1664 bp Num of repeats: 15 Spacers: s1-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 796-1664 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)