CRISPRone

CRISPRone report for GCA_004373575.1_ASM437357v1

♦ Seq 1: RWSQ01000016.1 Pseudomonas aeruginosa strain PAC117B IPC135_16.1, whole genome shotgun sequence

⇒Summary: seq-len = 92058 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 42325-53651 bp Zoom in on locus 1 x15 x26 CRISPR array Location: 42325-43194 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 42325-43194 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09718:cas1 Type: universal Location: 43454-44428 bp Gene: COG1203:cas3 Type: Type-I Location: 44425-47655 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 48066-49367 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 49354-50337 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 50348-51376 bp Gene: cd09739:cas6f Type: other Location: 51380-51943 bp CRISPR array Location: 52127-53651 bp Num of repeats: 26 Spacers: s15-s39 CRISPR array Location: 52127-53651 bp Num of repeats: 26 Spacers: s15-s39 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 42325-43194 bp]: array | spacers
           [Locus range 52127-53651 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWSQ01000002.1 Pseudomonas aeruginosa strain PAC117B IPC135_2.1, whole genome shotgun sequence

⇒Summary: seq-len = 703548 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 207544-208172 bp Zoom in on locus 1 x11 CRISPR array Location: 207544-208172 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 207544-208172 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 207544-208172 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)