CRISPRone

CRISPRone report for GCA_004373675.1_ASM437367v1

♦ Seq 1: RWRL01000001.1 Pseudomonas aeruginosa strain PAC98B IPC169_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 1918540 bp; # of CRISPR array = 1; # of cas gene = 4  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1401529-1402756 bp 2 Locus 2: 1833289-1844853 bp Zoom in on locus 1 x21 Zoom in on locus 2 CRISPR array Location: 1401529-1402756 bp Num of repeats: 21 Spacers: s1-s20 CRISPR array Location: 1401529-1402756 bp Num of repeats: 21 Spacers: s1-s20 Gene: cls000170:cas4 Type: Type-I Location: 1833289-1834833 bp Gene: unk Type: unknown Location: 1835917-1836096 bp Gene: pfam00078:RT Type: other Location: 1836828-1837544 bp Gene: unk Type: unknown Location: 1837588-1838253 bp Gene: unk Type: unknown Location: 1838442-1838750 bp Gene: pfam00078:RT Type: other Location: 1838802-1839335 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 1843984-1844853 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1401529-1402756 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWRL01000014.1 Pseudomonas aeruginosa strain PAC98B IPC169_14.1, whole genome shotgun sequence

⇒Summary: seq-len = 77293 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29372-39750 bp Zoom in on locus 1 x16 x15 CRISPR array Location: 29372-30300 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 29372-30300 bp Num of repeats: 16 Spacers: s1-s15 Gene: cd09718:cas1 Type: universal Location: 30560-31534 bp Gene: COG1203:cas3 Type: Type-I Location: 31531-34761 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 34819-36123 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 36110-37093 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 37104-38132 bp Gene: cd09739:cas6f Type: other Location: 38136-38699 bp CRISPR array Location: 38883-39750 bp Num of repeats: 15 Spacers: s16-s29 CRISPR array Location: 38883-39750 bp Num of repeats: 15 Spacers: s16-s29 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 29372-30300 bp]: array | spacers
           [Locus range 38883-39750 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)