CRISPRone

CRISPRone report for GCA_004373985.1_ASM437398v1

♦ Seq 1: RWTC01000004.1 Pseudomonas aeruginosa strain PAC9A IPC123_4.1, whole genome shotgun sequence

⇒Summary: seq-len = 512487 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 19322-28634 bp Zoom in on locus 1 Gene: cd09639:cas3 Type: Type-I Location: 19322-21688 bp Gene: unk Type: unknown Location: 21952-22614 bp Gene: pfam13280:WYL Type: other Location: 22752-23627 bp Gene: unk Type: unknown Location: 23756-25507 bp Gene: cd09696:cas3 Type: Subtype-I-U Location: 25455-28634 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWTC01000018.1 Pseudomonas aeruginosa strain PAC9A IPC123_18.1, whole genome shotgun sequence

⇒Summary: seq-len = 39321 bp; # of CRISPR array = 1; # of cas gene = 7  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29499-38769 bp Zoom in on locus 1 x23 CRISPR array Location: 29499-30992 bp Num of repeats: 23 Spacers: s1-s22 CRISPR array Location: 29499-30992 bp Num of repeats: 23 Spacers: s1-s22 Gene: cd09725:cas2 Type: universal Location: 31174-31464 bp Gene: cd09721:cas1 Type: universal Location: 31474-32514 bp Gene: pfam01930:cas4 Type: Type-I Location: 32518-33150 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 33169-34038 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 34050-35813 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 35810-36484 bp Gene: cd09641:cas3HD Type: Type-I Location: 36535-38769 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 29499-30992 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RWTC01000011.1 Pseudomonas aeruginosa strain PAC9A IPC123_11.1, whole genome shotgun sequence

⇒Summary: seq-len = 217674 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 168802-179773 bp Zoom in on locus 1 x15 x26 CRISPR array Location: 168802-169670 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 168802-169670 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09718:cas1 Type: universal Location: 169921-170895 bp Gene: COG1203:cas3 Type: Type-I Location: 170892-174122 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 174180-175484 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 175471-176454 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 176465-177493 bp Gene: cd09739:cas6f Type: other Location: 177497-178060 bp CRISPR array Location: 178245-179773 bp Num of repeats: 26 Spacers: s15-s39 CRISPR array Location: 178245-179773 bp Num of repeats: 26 Spacers: s15-s39 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 168802-169670 bp]: array | spacers
           [Locus range 178245-179773 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)