CRISPRone

CRISPRone report for GCA_004374365.1_ASM437436v1

♦ Seq 1: RWTZ01000019.1 Pseudomonas aeruginosa strain 295s071211BSL_PA2 IPC67_19.1, whole genome shotgun sequence

⇒Summary: seq-len = 49506 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38394-48993 bp Zoom in on locus 1 x19 x10 CRISPR array Location: 38394-39502 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 38394-39502 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09739:cas6f Type: other Location: 39685-40248 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 40252-41280 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 41291-42274 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 42261-43562 bp Gene: COG1203:cas3 Type: Type-I Location: 43973-47203 bp Gene: cd09718:cas1 Type: universal Location: 47200-48174 bp CRISPR array Location: 48426-48993 bp Num of repeats: 10 Spacers: s19-s27 CRISPR array Location: 48426-48993 bp Num of repeats: 10 Spacers: s19-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38394-39502 bp]: array | spacers
           [Locus range 48426-48993 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWTZ01000017.1 Pseudomonas aeruginosa strain 295s071211BSL_PA2 IPC67_17.1, whole genome shotgun sequence

⇒Summary: seq-len = 72955 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 516-1265 bp Zoom in on locus 1 x13 CRISPR array Location: 516-1265 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 516-1265 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 516-1265 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)