CRISPRone

CRISPRone report for GCA_004374395.1_ASM437439v1

♦ Seq 1: RWUE01000007.1 Pseudomonas aeruginosa strain 278S180511BSL_PA2 IPC60_7.1, whole genome shotgun sequence

⇒Summary: seq-len = 417021 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 415758-416506 bp Zoom in on locus 1 x13 CRISPR array Location: 415758-416506 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 415758-416506 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 415758-416506 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWUE01000019.1 Pseudomonas aeruginosa strain 278S180511BSL_PA2 IPC60_19.1, whole genome shotgun sequence

⇒Summary: seq-len = 99298 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 514-11113 bp Zoom in on locus 1 x10 x19 CRISPR array Location: 514-1082 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 514-1082 bp Num of repeats: 10 Spacers: s1-s9 Gene: cd09718:cas1 Type: universal Location: 1333-2307 bp Gene: COG1203:cas3 Type: Type-I Location: 2304-5534 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5945-7246 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7233-8216 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8227-9255 bp Gene: cd09739:cas6f Type: other Location: 9259-9822 bp CRISPR array Location: 10006-11113 bp Num of repeats: 19 Spacers: s10-s27 CRISPR array Location: 10006-11113 bp Num of repeats: 19 Spacers: s10-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 514-1082 bp]: array | spacers
           [Locus range 10006-11113 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)