CRISPRone

CRISPRone report for GCA_004374415.1_ASM437441v1

♦ Seq 1: RWUA01000005.1 Pseudomonas aeruginosa strain 295s071211BSL_PA1 IPC66_5.1, whole genome shotgun sequence

⇒Summary: seq-len = 389807 bp; # of CRISPR array = 2; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 293322-303834 bp Zoom in on locus 1 x14 x8 CRISPR array Location: 293322-294143 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 293322-294143 bp Num of repeats: 14 Spacers: s1-s13 Gene: pfam09707:cas2 Type: universal Location: 294208-294507 bp Gene: cd09719:cas1 Type: universal Location: 294504-295394 bp Gene: pfam08798:cas6e Type: other Location: 295421-295960 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 296007-296669 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 296671-297813 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 297823-298353 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 298350-299918 bp Gene: cd09641:cas3HD Type: Type-I Location: 299921-302602 bp CRISPR array Location: 303378-303834 bp Num of repeats: 8 Spacers: s14-s20 CRISPR array Location: 303378-303834 bp Num of repeats: 8 Spacers: s14-s20 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 293322-294143 bp]: array | spacers
           [Locus range 303378-303834 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWUA01000015.1 Pseudomonas aeruginosa strain 295s071211BSL_PA1 IPC66_15.1, whole genome shotgun sequence

⇒Summary: seq-len = 155524 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 107678-108725 bp Zoom in on locus 1 x18 CRISPR array Location: 107678-108725 bp Num of repeats: 18 Spacers: s1-s17 CRISPR array Location: 107678-108725 bp Num of repeats: 18 Spacers: s1-s17 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 107678-108725 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)