CRISPRone

CRISPRone report for GCA_004375115.1_ASM437511v1

♦ Seq 1: RWUJ01000021.1 Pseudomonas aeruginosa strain 259S240811BSL_PA2 IPC55_21.1, whole genome shotgun sequence

⇒Summary: seq-len = 49206 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 38394-48693 bp Zoom in on locus 1 x14 x10 CRISPR array Location: 38394-39202 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 38394-39202 bp Num of repeats: 14 Spacers: s1-s13 Gene: cd09739:cas6f Type: other Location: 39385-39948 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 39952-40980 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 40991-41974 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 41961-43262 bp Gene: COG1203:cas3 Type: Type-I Location: 43673-46903 bp Gene: cd09718:cas1 Type: universal Location: 46900-47874 bp CRISPR array Location: 48126-48693 bp Num of repeats: 10 Spacers: s14-s22 CRISPR array Location: 48126-48693 bp Num of repeats: 10 Spacers: s14-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 38394-39202 bp]: array | spacers
           [Locus range 48126-48693 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWUJ01000011.1 Pseudomonas aeruginosa strain 259S240811BSL_PA2 IPC55_11.1, whole genome shotgun sequence

⇒Summary: seq-len = 209841 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 208578-209326 bp Zoom in on locus 1 x13 CRISPR array Location: 208578-209326 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 208578-209326 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 208578-209326 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)