CRISPRone

CRISPRone report for GCA_004375325.1_ASM437532v1

♦ Seq 1: RWUV01000012.1 Pseudomonas aeruginosa strain 175S070312EX2DAY21_PA1 IPC41_12.1, whole genome shotgun sequence

⇒Summary: seq-len = 210168 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 208711-209817 bp Zoom in on locus 1 x19 CRISPR array Location: 208711-209817 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 208711-209817 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 208711-209817 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWUV01000019.1 Pseudomonas aeruginosa strain 175S070312EX2DAY21_PA1 IPC41_19.1, whole genome shotgun sequence

⇒Summary: seq-len = 69336 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 20190-30978 bp Zoom in on locus 1 x15 x17 CRISPR array Location: 20190-21058 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 20190-21058 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09718:cas1 Type: universal Location: 21318-22292 bp Gene: COG1203:cas3 Type: Type-I Location: 22289-25519 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 25930-27231 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 27218-28201 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 28212-29240 bp Gene: cd09739:cas6f Type: other Location: 29244-29807 bp CRISPR array Location: 29991-30978 bp Num of repeats: 17 Spacers: s15-s30 CRISPR array Location: 29991-30978 bp Num of repeats: 17 Spacers: s15-s30 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 20190-21058 bp]: array | spacers
           [Locus range 29991-30978 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)