CRISPRone

CRISPRone report for GCA_004375375.1_ASM437537v1

♦ Seq 1: RWVC01000017.1 Pseudomonas aeruginosa strain 128S180412BSL_PA2 IPC33_17.1, whole genome shotgun sequence

⇒Summary: seq-len = 46989 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 35878-46476 bp Zoom in on locus 1 x19 x10 CRISPR array Location: 35878-36986 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 35878-36986 bp Num of repeats: 19 Spacers: s1-s18 Gene: cd09739:cas6f Type: other Location: 37168-37731 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 37735-38763 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 38774-39757 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 39744-41045 bp Gene: COG1203:cas3 Type: Type-I Location: 41456-44686 bp Gene: cd09718:cas1 Type: universal Location: 44683-45657 bp CRISPR array Location: 45909-46476 bp Num of repeats: 10 Spacers: s19-s27 CRISPR array Location: 45909-46476 bp Num of repeats: 10 Spacers: s19-s27 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 35878-36986 bp]: array | spacers
           [Locus range 45909-46476 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWVC01000005.1 Pseudomonas aeruginosa strain 128S180412BSL_PA2 IPC33_5.1, whole genome shotgun sequence

⇒Summary: seq-len = 630897 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 629634-630382 bp Zoom in on locus 1 x13 CRISPR array Location: 629634-630382 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 629634-630382 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 629634-630382 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)