CRISPRone

CRISPRone report for GCA_004375385.1_ASM437538v1

♦ Seq 1: RWVB01000020.1 Pseudomonas aeruginosa strain 136S260811BSL_PA1 IPC34_20.1, whole genome shotgun sequence

⇒Summary: seq-len = 49456 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 436-10924 bp Zoom in on locus 1 x15 x12 CRISPR array Location: 436-1304 bp Num of repeats: 15 Spacers: s1-s14 CRISPR array Location: 436-1304 bp Num of repeats: 15 Spacers: s1-s14 Gene: cd09718:cas1 Type: universal Location: 1564-2538 bp Gene: COG1203:cas3 Type: Type-I Location: 2535-5765 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 6176-7477 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 7464-8447 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 8458-9486 bp Gene: cd09739:cas6f Type: other Location: 9490-10053 bp CRISPR array Location: 10237-10924 bp Num of repeats: 12 Spacers: s15-s25 CRISPR array Location: 10237-10924 bp Num of repeats: 12 Spacers: s15-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 436-1304 bp]: array | spacers
           [Locus range 10237-10924 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWVB01000010.1 Pseudomonas aeruginosa strain 136S260811BSL_PA1 IPC34_10.1, whole genome shotgun sequence

⇒Summary: seq-len = 241411 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 239870-240976 bp Zoom in on locus 1 x19 CRISPR array Location: 239870-240976 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 239870-240976 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 239870-240976 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)