CRISPRone

CRISPRone report for GCA_004375455.1_ASM437545v1

♦ Seq 1: RWVG01000004.1 Pseudomonas aeruginosa strain 37s051011BSL_PA1 IPC29_4.1, whole genome shotgun sequence

⇒Summary: seq-len = 505728 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 207900-208589 bp Zoom in on locus 1 x12 CRISPR array Location: 207900-208589 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 207900-208589 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 207900-208589 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWVG01000017.1 Pseudomonas aeruginosa strain 37s051011BSL_PA1 IPC29_17.1, whole genome shotgun sequence

⇒Summary: seq-len = 70868 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 21700-32259 bp Zoom in on locus 1 x17 x17 CRISPR array Location: 21700-22688 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 21700-22688 bp Num of repeats: 17 Spacers: s1-s16 Gene: cd09718:cas1 Type: universal Location: 22948-23922 bp Gene: COG1203:cas3 Type: Type-I Location: 23919-27149 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 27207-28511 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 28498-29481 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 29492-30520 bp Gene: cd09739:cas6f Type: other Location: 30524-31087 bp CRISPR array Location: 31271-32259 bp Num of repeats: 17 Spacers: s17-s32 CRISPR array Location: 31271-32259 bp Num of repeats: 17 Spacers: s17-s32 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 21700-22688 bp]: array | spacers
           [Locus range 31271-32259 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RWVG01000001.1 Pseudomonas aeruginosa strain 37s051011BSL_PA1 IPC29_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 833113 bp; # of CRISPR array = 3; # of cas gene = 8  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 179682-190193 bp Zoom in on locus 1 x10 x2 x9 CRISPR array Location: 179682-180259 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 179682-180259 bp Num of repeats: 10 Spacers: s1-s9 Gene: pfam09707:cas2 Type: universal Location: 180324-180623 bp Gene: cd09719:cas1 Type: universal Location: 180620-181510 bp Gene: pfam08798:cas6e Type: other Location: 181537-182076 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 182123-182785 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 182787-183929 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 183939-184469 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 184466-186034 bp Gene: cd09641:cas3HD Type: Type-I Location: 186037-188718 bp CRISPR array Location: 189492-189581 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 189492-189581 bp Num of repeats: 2 Spacers: s10-s10 CRISPR array Location: 189676-190193 bp Num of repeats: 9 Spacers: s11-s18 CRISPR array Location: 189676-190193 bp Num of repeats: 9 Spacers: s11-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 179682-180259 bp]: array | spacers
           [Locus range 189492-189581 bp]: array | spacers
           [Locus range 189676-190193 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)