CRISPRone

CRISPRone report for GCA_004375515.1_ASM437551v1

♦ Seq 1: RWVI01000023.1 Pseudomonas aeruginosa strain 2S030611BSL_PA1 IPC26_23.1, whole genome shotgun sequence

⇒Summary: seq-len = 49042 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 296-10618 bp Zoom in on locus 1 x3 x26 CRISPR array Location: 296-444 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 296-444 bp Num of repeats: 3 Spacers: s1-s2 Gene: cd09718:cas1 Type: universal Location: 701-1675 bp Gene: COG1203:cas3 Type: Type-I Location: 1672-4902 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 4960-6264 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6251-7234 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7245-8273 bp Gene: cd09739:cas6f Type: other Location: 8277-8840 bp CRISPR array Location: 9091-10618 bp Num of repeats: 26 Spacers: s3-s27 CRISPR array Location: 9091-10618 bp Num of repeats: 26 Spacers: s3-s27 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 296-444 bp]: array | spacers
           [Locus range 9091-10618 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWVI01000001.1 Pseudomonas aeruginosa strain 2S030611BSL_PA1 IPC26_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 648947 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 556129-557237 bp Zoom in on locus 1 x19 CRISPR array Location: 556129-557237 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 556129-557237 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 556129-557237 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)