CRISPRone

CRISPRone report for GCA_004378765.1_ASM437876v1

♦ Seq 1: RWPJ01000001.1 Pseudomonas aeruginosa strain PA-CL534x IPC627_1.1, whole genome shotgun sequence

⇒Summary: seq-len = 1254195 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 893951-894698 bp Zoom in on locus 1 x13 CRISPR array Location: 893951-894698 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 893951-894698 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 893951-894698 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: RWPJ01000013.1 Pseudomonas aeruginosa strain PA-CL534x IPC627_13.1, whole genome shotgun sequence

⇒Summary: seq-len = 192481 bp; # of CRISPR array = 0; # of cas gene = 3  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15185-20545 bp Zoom in on locus 1 Gene: COG4804:PD-DExK Type: other Location: 15185-16225 bp Gene: unk Type: unknown Location: 16222-17700 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 17726-20116 bp Gene: cls001593:casR Type: Type-I Location: 20228-20545 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: RWPJ01000015.1 Pseudomonas aeruginosa strain PA-CL534x IPC627_15.1, whole genome shotgun sequence

⇒Summary: seq-len = 74947 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 317-10152 bp Zoom in on locus 1 x5 x11 CRISPR array Location: 317-585 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 317-585 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09718:cas1 Type: universal Location: 845-1819 bp Gene: COG1203:cas3 Type: Type-I Location: 1816-5052 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5463-6764 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6751-7734 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7745-8773 bp Gene: cd09739:cas6f Type: other Location: 8777-9340 bp CRISPR array Location: 9525-10152 bp Num of repeats: 11 Spacers: s5-s14 CRISPR array Location: 9525-10152 bp Num of repeats: 11 Spacers: s5-s14 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 317-585 bp]: array | spacers
           [Locus range 9525-10152 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: RWPJ01000025.1 Pseudomonas aeruginosa strain PA-CL534x IPC627_25.1, whole genome shotgun sequence

⇒Summary: seq-len = 2357 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 932-2041 bp Zoom in on locus 1 x19 CRISPR array Location: 932-2041 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 932-2041 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 932-2041 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)