CRISPRone

CRISPRone report for GCA_004684385.1_ASM468438v1

♦ Seq 1: SRJS01000101.1 Clostridioides difficile strain MCD71 MCD71_101, whole genome shotgun sequence

⇒Summary: seq-len = 795 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 42-798 bp Zoom in on locus 1 x12 CRISPR array Location: 42-798 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 42-798 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 42-798 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SRJS01000018.1 Clostridioides difficile strain MCD71 MCD71_18, whole genome shotgun sequence

⇒Summary: seq-len = 13717 bp; # of CRISPR array = 0; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-698 bp Zoom in on locus 1 Gene: cd09722:cas1 Type: universal Location: 3-197 bp Gene: cd09725:cas2 Type: universal Location: 408-698 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SRJS01000120.1 Clostridioides difficile strain MCD71 MCD71_120, whole genome shotgun sequence

⇒Summary: seq-len = 29765 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 217-6969 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 217-2775 bp Gene: cd09693:cas5 Type: Type-I Location: 2799-3539 bp Gene: pfam05107:cas7b Type: Type-I Location: 3541-4530 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 4523-6262 bp Gene: cd09652:cas6 Type: other Location: 6274-6969 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SRJS01000059.1 Clostridioides difficile strain MCD71 MCD71_59, whole genome shotgun sequence

⇒Summary: seq-len = 1790 bp; # of CRISPR array = 1; # of cas gene = 2  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6-1743 bp Zoom in on locus 1 x6 CRISPR array Location: 6-366 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 6-366 bp Num of repeats: 6 Spacers: s1-s5 Gene: pfam01930:cas4 Type: Type-I Location: 450-944 bp Gene: cd09634:cas1 Type: universal Location: 970-1743 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 6-366 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SRJS01000169.1 Clostridioides difficile strain MCD71 MCD71_169, whole genome shotgun sequence

⇒Summary: seq-len = 8248 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2916-3537 bp Zoom in on locus 1 x10 CRISPR array Location: 2916-3537 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 2916-3537 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2916-3537 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: SRJS01000017.1 Clostridioides difficile strain MCD71 MCD71_17, whole genome shotgun sequence

⇒Summary: seq-len = 14045 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13686-14047 bp Zoom in on locus 1 x6 CRISPR array Location: 13686-14047 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 13686-14047 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13686-14047 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: SRJS01000033.1 Clostridioides difficile strain MCD71 MCD71_33, whole genome shotgun sequence

⇒Summary: seq-len = 36664 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6101-6521 bp Zoom in on locus 1 x7 CRISPR array Location: 6101-6521 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 6101-6521 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6101-6521 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: SRJS01000001.1 Clostridioides difficile strain MCD71 MCD71_1, whole genome shotgun sequence

⇒Summary: seq-len = 2210 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 595-756 bp Zoom in on locus 1 x3 CRISPR array Location: 595-756 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 595-756 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 595-756 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: SRJS01000112.1 Clostridioides difficile strain MCD71 MCD71_112, whole genome shotgun sequence

⇒Summary: seq-len = 33016 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-7596 bp Zoom in on locus 1 Gene: cd09641:cas3HD Type: Type-I Location: 1-2139 bp Gene: cd09693:cas5 Type: Type-I Location: 2166-2963 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2979-3992 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 4012-5487 bp Gene: pfam01881:cas6 Type: other Location: 5492-6229 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 6487-7596 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: SRJS01000110.1 Clostridioides difficile strain MCD71 MCD71_110, whole genome shotgun sequence

⇒Summary: seq-len = 18012 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17853-18013 bp Zoom in on locus 1 x3 CRISPR array Location: 17853-18013 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 17853-18013 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17853-18013 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: SRJS01000189.1 Clostridioides difficile strain MCD71 MCD71_189, whole genome shotgun sequence

⇒Summary: seq-len = 29973 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 29363-29921 bp Zoom in on locus 1 x9 CRISPR array Location: 29363-29921 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 29363-29921 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 29363-29921 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: SRJS01000052.1 Clostridioides difficile strain MCD71 MCD71_52, whole genome shotgun sequence

⇒Summary: seq-len = 96786 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 69182-69475 bp Zoom in on locus 1 x5 CRISPR array Location: 69182-69475 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 69182-69475 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 69182-69475 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 13: SRJS01000172.1 Clostridioides difficile strain MCD71 MCD71_172, whole genome shotgun sequence

⇒Summary: seq-len = 691 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-691 bp Zoom in on locus 1 x11 CRISPR array Location: 2-691 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 2-691 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 2-691 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)