CRISPRone

CRISPRone report for GCA_004684415.1_ASM468441v1

♦ Seq 1: SRJV01000243.1 Clostridioides difficile strain MCD44 MCD44_243, whole genome shotgun sequence

⇒Summary: seq-len = 7733 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5859-6279 bp Zoom in on locus 1 x7 CRISPR array Location: 5859-6279 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 5859-6279 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 5859-6279 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SRJV01000106.1 Clostridioides difficile strain MCD44 MCD44_106, whole genome shotgun sequence

⇒Summary: seq-len = 544 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 261-487 bp Zoom in on locus 1 x4 CRISPR array Location: 261-487 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 261-487 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 261-487 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SRJV01000173.1 Clostridioides difficile strain MCD44 MCD44_173, whole genome shotgun sequence

⇒Summary: seq-len = 4846 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 192-4844 bp Zoom in on locus 1 Gene: cd09652:cas6 Type: other Location: 192-887 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 899-2638 bp Gene: pfam05107:cas7b Type: Type-I Location: 2631-3620 bp Gene: cd09693:cas5 Type: Type-I Location: 3622-4362 bp Gene: cd09641:cas3HD Type: Type-I Location: 4386-4844 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SRJV01000044.1 Clostridioides difficile strain MCD44 MCD44_44, whole genome shotgun sequence

⇒Summary: seq-len = 13613 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3287-3647 bp Zoom in on locus 1 x6 CRISPR array Location: 3287-3647 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 3287-3647 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3287-3647 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SRJV01000039.1 Clostridioides difficile strain MCD44 MCD44_39, whole genome shotgun sequence

⇒Summary: seq-len = 3965 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3120-3347 bp Zoom in on locus 1 x4 CRISPR array Location: 3120-3347 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 3120-3347 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3120-3347 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: SRJV01000124.1 Clostridioides difficile strain MCD44 MCD44_124, whole genome shotgun sequence

⇒Summary: seq-len = 20686 bp; # of CRISPR array = 1; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13-2882 bp Zoom in on locus 1 x12 CRISPR array Location: 13-770 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 13-770 bp Num of repeats: 12 Spacers: s1-s11 Gene: pfam01930:cas4 Type: Type-I Location: 854-1348 bp Gene: cd09722:cas1 Type: universal Location: 1374-2381 bp Gene: cd09725:cas2 Type: universal Location: 2592-2882 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 13-770 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: SRJV01000075.1 Clostridioides difficile strain MCD44 MCD44_75, whole genome shotgun sequence

⇒Summary: seq-len = 8485 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 7922-8084 bp Zoom in on locus 1 x3 CRISPR array Location: 7922-8084 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 7922-8084 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 7922-8084 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: SRJV01000237.1 Clostridioides difficile strain MCD44 MCD44_237, whole genome shotgun sequence

⇒Summary: seq-len = 1209 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-1211 bp Zoom in on locus 1 x19 CRISPR array Location: 0-1211 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 0-1211 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-1211 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: SRJV01000202.1 Clostridioides difficile strain MCD44 MCD44_202, whole genome shotgun sequence

⇒Summary: seq-len = 9079 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3305-3991 bp Zoom in on locus 1 x11 CRISPR array Location: 3305-3991 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 3305-3991 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3305-3991 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: SRJV01000019.1 Clostridioides difficile strain MCD44 MCD44_19, whole genome shotgun sequence

⇒Summary: seq-len = 9561 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 911-1204 bp Zoom in on locus 1 x5 CRISPR array Location: 911-1204 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 911-1204 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 911-1204 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: SRJV01000209.1 Clostridioides difficile strain MCD44 MCD44_209, whole genome shotgun sequence

⇒Summary: seq-len = 13979 bp; # of CRISPR array = 0; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 129-6627 bp Zoom in on locus 1 Gene: pfam01881:cas6 Type: other Location: 129-866 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 871-2346 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 2366-3379 bp Gene: cd09693:cas5 Type: Type-I Location: 3395-4192 bp Gene: cd09641:cas3HD Type: Type-I Location: 4219-6627 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: SRJV01000251.1 Clostridioides difficile strain MCD44 MCD44_251, whole genome shotgun sequence

⇒Summary: seq-len = 54549 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31-456 bp Zoom in on locus 1 x7 CRISPR array Location: 31-456 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 31-456 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 31-456 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)