CRISPRone

CRISPRone report for GCA_004684675.1_ASM468467v1

♦ Seq 1: SRKM01000076.1 Clostridioides difficile strain CD119 CD119_79, whole genome shotgun sequence

⇒Summary: seq-len = 265261 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 201065-201486 bp Zoom in on locus 1 x7 CRISPR array Location: 201065-201486 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 201065-201486 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 201065-201486 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SRKM01000020.1 Clostridioides difficile strain CD119 CD119_22, whole genome shotgun sequence

⇒Summary: seq-len = 902 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 13-900 bp Zoom in on locus 1 x14 CRISPR array Location: 13-900 bp Num of repeats: 14 Spacers: s1-s13 CRISPR array Location: 13-900 bp Num of repeats: 14 Spacers: s1-s13 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 13-900 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SRKM01000014.1 Clostridioides difficile strain CD119 CD119_16, whole genome shotgun sequence

⇒Summary: seq-len = 14482 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1157-1318 bp Zoom in on locus 1 x3 CRISPR array Location: 1157-1318 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1157-1318 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1157-1318 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SRKM01000045.1 Clostridioides difficile strain CD119 CD119_47, whole genome shotgun sequence

⇒Summary: seq-len = 228788 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 15858-19274 bp Zoom in on locus 1 x13 x5 CRISPR array Location: 15858-16680 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 15858-16680 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 18984-19274 bp Num of repeats: 5 Spacers: s13-s16 CRISPR array Location: 18984-19274 bp Num of repeats: 5 Spacers: s13-s16 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 15858-16680 bp]: array | spacers
           [Locus range 18984-19274 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SRKM01000050.1 Clostridioides difficile strain CD119 CD119_52, whole genome shotgun sequence

⇒Summary: seq-len = 238320 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 199707-200067 bp Zoom in on locus 1 x6 CRISPR array Location: 199707-200067 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 199707-200067 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 199707-200067 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: SRKM01000041.1 Clostridioides difficile strain CD119 CD119_43, whole genome shotgun sequence

⇒Summary: seq-len = 8336 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4729-5413 bp Zoom in on locus 1 x11 CRISPR array Location: 4729-5413 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 4729-5413 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4729-5413 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: SRKM01000061.1 Clostridioides difficile strain CD119 CD119_64, whole genome shotgun sequence

⇒Summary: seq-len = 522 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 162-522 bp Zoom in on locus 1 x6 CRISPR array Location: 162-522 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 162-522 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 162-522 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: SRKM01000078.1 Clostridioides difficile strain CD119 CD119_81, whole genome shotgun sequence

⇒Summary: seq-len = 11321 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 595-822 bp Zoom in on locus 1 x4 CRISPR array Location: 595-822 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 595-822 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 595-822 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: SRKM01000079.1 Clostridioides difficile strain CD119 CD119_82, whole genome shotgun sequence

⇒Summary: seq-len = 147355 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 139858-140151 bp Zoom in on locus 1 x5 CRISPR array Location: 139858-140151 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 139858-140151 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 139858-140151 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: SRKM01000025.1 Clostridioides difficile strain CD119 CD119_27, whole genome shotgun sequence

⇒Summary: seq-len = 192240 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 46-7349 bp Zoom in on locus 1 x6 CRISPR array Location: 46-407 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 46-407 bp Num of repeats: 6 Spacers: s1-s5 Gene: cd09641:cas3HD Type: Type-I Location: 597-3155 bp Gene: cd09693:cas5 Type: Type-I Location: 3179-3919 bp Gene: pfam05107:cas7b Type: Type-I Location: 3921-4910 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 4903-6642 bp Gene: cd09652:cas6 Type: other Location: 6654-7349 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 46-407 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: SRKM01000037.1 Clostridioides difficile strain CD119 CD119_39, whole genome shotgun sequence

⇒Summary: seq-len = 64428 bp; # of CRISPR array = 1; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-2390 bp Zoom in on locus 1 x5 CRISPR array Location: 0-278 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 0-278 bp Num of repeats: 5 Spacers: s1-s4 Gene: pfam01930:cas4 Type: Type-I Location: 362-856 bp Gene: cd09722:cas1 Type: universal Location: 882-1889 bp Gene: cd09725:cas2 Type: universal Location: 2100-2390 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 0-278 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: SRKM01000040.1 Clostridioides difficile strain CD119 CD119_42, whole genome shotgun sequence

⇒Summary: seq-len = 484746 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 158414-166279 bp 2 Locus 2: 239527-240084 bp Zoom in on locus 1 Zoom in on locus 2 x9 Gene: cd09641:cas3HD Type: Type-I Location: 158414-160822 bp Gene: cd09693:cas5 Type: Type-I Location: 160849-161646 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 161662-162675 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 162695-164170 bp Gene: pfam01881:cas6 Type: other Location: 164175-164912 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 165170-166279 bp CRISPR array Location: 239527-240084 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 239527-240084 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 239527-240084 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)