CRISPRone

CRISPRone report for GCA_004684695.1_ASM468469v1

♦ Seq 1: SRKN01000088.1 Clostridioides difficile strain CD117 CD117_91, whole genome shotgun sequence

⇒Summary: seq-len = 246115 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 927-1484 bp Zoom in on locus 1 x9 CRISPR array Location: 927-1484 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 927-1484 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 927-1484 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SRKN01000092.1 Clostridioides difficile strain CD117 CD117_95, whole genome shotgun sequence

⇒Summary: seq-len = 570 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 0-540 bp Zoom in on locus 1 x9 CRISPR array Location: 0-540 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 0-540 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 0-540 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SRKN01000103.1 Clostridioides difficile strain CD117 CD117_106, whole genome shotgun sequence

⇒Summary: seq-len = 28533 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17807-18034 bp Zoom in on locus 1 x4 CRISPR array Location: 17807-18034 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 17807-18034 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17807-18034 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SRKN01000027.1 Clostridioides difficile strain CD117 CD117_28, whole genome shotgun sequence

⇒Summary: seq-len = 192657 bp; # of CRISPR array = 1; # of cas gene = 5  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1-7766 bp Zoom in on locus 1 x13 CRISPR array Location: 1-824 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 1-824 bp Num of repeats: 13 Spacers: s1-s12 Gene: cd09641:cas3HD Type: Type-I Location: 1014-3572 bp Gene: cd09693:cas5 Type: Type-I Location: 3596-4336 bp Gene: pfam05107:cas7b Type: Type-I Location: 4338-5327 bp Gene: mkCas0106:cas8b1 Type: Subtype-I-B Location: 5320-7059 bp Gene: cd09652:cas6 Type: other Location: 7071-7766 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 1-824 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SRKN01000096.1 Clostridioides difficile strain CD117 CD117_99, whole genome shotgun sequence

⇒Summary: seq-len = 355446 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 316833-317193 bp Zoom in on locus 1 x6 CRISPR array Location: 316833-317193 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 316833-317193 bp Num of repeats: 6 Spacers: s1-s5 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 316833-317193 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: SRKN01000046.1 Clostridioides difficile strain CD117 CD117_47, whole genome shotgun sequence

⇒Summary: seq-len = 92496 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 91849-92011 bp Zoom in on locus 1 x3 CRISPR array Location: 91849-92011 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 91849-92011 bp Num of repeats: 3 Spacers: s1-s2 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 91849-92011 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: SRKN01000073.1 Clostridioides difficile strain CD117 CD117_76, whole genome shotgun sequence

⇒Summary: seq-len = 263189 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 185250-185543 bp Zoom in on locus 1 x5 CRISPR array Location: 185250-185543 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 185250-185543 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 185250-185543 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: SRKN01000100.1 Clostridioides difficile strain CD117 CD117_103, whole genome shotgun sequence

⇒Summary: seq-len = 64380 bp; # of CRISPR array = 1; # of cas gene = 3  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-2342 bp Zoom in on locus 1 x4 CRISPR array Location: 2-230 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 2-230 bp Num of repeats: 4 Spacers: s1-s3 Gene: pfam01930:cas4 Type: Type-I Location: 314-808 bp Gene: cd09722:cas1 Type: universal Location: 834-1841 bp Gene: cd09725:cas2 Type: universal Location: 2052-2342 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 2-230 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: SRKN01000101.1 Clostridioides difficile strain CD117 CD117_104, whole genome shotgun sequence

⇒Summary: seq-len = 194819 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63777-64197 bp Zoom in on locus 1 x7 CRISPR array Location: 63777-64197 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 63777-64197 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63777-64197 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: SRKN01000052.1 Clostridioides difficile strain CD117 CD117_53, whole genome shotgun sequence

⇒Summary: seq-len = 557 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3-561 bp Zoom in on locus 1 x9 CRISPR array Location: 3-561 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 3-561 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3-561 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: SRKN01000072.1 Clostridioides difficile strain CD117 CD117_75, whole genome shotgun sequence

⇒Summary: seq-len = 8666 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4729-5743 bp Zoom in on locus 1 x16 CRISPR array Location: 4729-5743 bp Num of repeats: 16 Spacers: s1-s15 CRISPR array Location: 4729-5743 bp Num of repeats: 16 Spacers: s1-s15 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 4729-5743 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 12: SRKN01000071.1 Clostridioides difficile strain CD117 CD117_74, whole genome shotgun sequence

⇒Summary: seq-len = 238727 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 72449-80314 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 72449-73558 bp Gene: pfam01881:cas6 Type: other Location: 73816-74553 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 74558-76033 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 76053-77066 bp Gene: cd09693:cas5 Type: Type-I Location: 77082-77879 bp Gene: cd09641:cas3HD Type: Type-I Location: 77906-80314 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)