CRISPRone

CRISPRone report for GCA_004684745.1_ASM468474v1

♦ Seq 1: SRKP01000035.1 Clostridioides difficile strain CD12 CD12_35, whole genome shotgun sequence

⇒Summary: seq-len = 64237 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 63630-64243 bp Zoom in on locus 1 x10 CRISPR array Location: 63630-64243 bp Num of repeats: 10 Spacers: s1-s9 CRISPR array Location: 63630-64243 bp Num of repeats: 10 Spacers: s1-s9 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 63630-64243 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SRKP01000021.1 Clostridioides difficile strain CD12 CD12_21, whole genome shotgun sequence

⇒Summary: seq-len = 61099 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 60677-61098 bp Zoom in on locus 1 x7 CRISPR array Location: 60677-61098 bp Num of repeats: 7 Spacers: s1-s6 CRISPR array Location: 60677-61098 bp Num of repeats: 7 Spacers: s1-s6 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 60677-61098 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SRKP01000056.1 Clostridioides difficile strain CD12 CD12_56, whole genome shotgun sequence

⇒Summary: seq-len = 107262 bp; # of CRISPR array = 1; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 24623-32969 bp 2 Locus 2: 106252-106747 bp Zoom in on locus 1 Zoom in on locus 2 x8 Gene: cd09641:cas3HD Type: Type-I Location: 24623-27031 bp Gene: cd09693:cas5 Type: Type-I Location: 27058-27855 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 27871-28887 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 28907-30382 bp Gene: pfam01881:cas6 Type: other Location: 30387-31124 bp Gene: unk Type: unknown Location: 31225-31401 bp Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 31860-32969 bp CRISPR array Location: 106252-106747 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 106252-106747 bp Num of repeats: 8 Spacers: s1-s7 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 106252-106747 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SRKP01000089.1 Clostridioides difficile strain CD12 CD12_90, whole genome shotgun sequence

⇒Summary: seq-len = 475708 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 275276-285198 bp Zoom in on locus 1 x6 CRISPR array Location: 275276-275633 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 275276-275633 bp Num of repeats: 6 Spacers: s1-s5 Gene: cd09725:cas2 Type: universal Location: 275817-276083 bp Gene: cd09722:cas1 Type: universal Location: 276086-277066 bp Gene: pfam01930:cas4 Type: Type-I Location: 277069-277587 bp Gene: cd09641:cas3HD Type: Type-I Location: 277635-279956 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 279967-280668 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 280670-281584 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 281586-283463 bp Gene: pfam01881:cas6 Type: other Location: 283469-284263 bp Gene: pfam13280:WYL Type: other Location: 284284-285198 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 275276-275633 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SRKP01000078.1 Clostridioides difficile strain CD12 CD12_78, whole genome shotgun sequence

⇒Summary: seq-len = 260901 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3085-3833 bp Zoom in on locus 1 x12 CRISPR array Location: 3085-3833 bp Num of repeats: 12 Spacers: s1-s11 CRISPR array Location: 3085-3833 bp Num of repeats: 12 Spacers: s1-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3085-3833 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 6: SRKP01000063.1 Clostridioides difficile strain CD12 CD12_63, whole genome shotgun sequence

⇒Summary: seq-len = 17698 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 33-853 bp Zoom in on locus 1 x13 CRISPR array Location: 33-853 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 33-853 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 33-853 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 7: SRKP01000088.1 Clostridioides difficile strain CD12 CD12_89, whole genome shotgun sequence

⇒Summary: seq-len = 118190 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 17772-19581 bp 2 Locus 2: 100192-100482 bp Zoom in on locus 1 x28 Zoom in on locus 2 x5 CRISPR array Location: 17772-19581 bp Num of repeats: 28 Spacers: s1-s27 CRISPR array Location: 17772-19581 bp Num of repeats: 28 Spacers: s1-s27 CRISPR array Location: 100192-100482 bp Num of repeats: 5 Spacers: s28-s31 CRISPR array Location: 100192-100482 bp Num of repeats: 5 Spacers: s28-s31 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 17772-19581 bp]: array | spacers
           [Locus range 100192-100482 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 8: SRKP01000080.1 Clostridioides difficile strain CD12 CD12_80, whole genome shotgun sequence

⇒Summary: seq-len = 12552 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 34-2516 bp Zoom in on locus 1 x3 x10 CRISPR array Location: 34-194 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 34-194 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 1896-2516 bp Num of repeats: 10 Spacers: s3-s11 CRISPR array Location: 1896-2516 bp Num of repeats: 10 Spacers: s3-s11 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 34-194 bp]: array | spacers
           [Locus range 1896-2516 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 9: SRKP01000019.1 Clostridioides difficile strain CD12 CD12_19, whole genome shotgun sequence

⇒Summary: seq-len = 91599 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 90905-91596 bp Zoom in on locus 1 x11 CRISPR array Location: 90905-91596 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 90905-91596 bp Num of repeats: 11 Spacers: s1-s10 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 90905-91596 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 10: SRKP01000064.1 Clostridioides difficile strain CD12 CD12_64, whole genome shotgun sequence

⇒Summary: seq-len = 623 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 34-592 bp Zoom in on locus 1 x9 CRISPR array Location: 34-592 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 34-592 bp Num of repeats: 9 Spacers: s1-s8 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 34-592 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 11: SRKP01000060.1 Clostridioides difficile strain CD12 CD12_60, whole genome shotgun sequence

⇒Summary: seq-len = 117189 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 116083-116374 bp Zoom in on locus 1 x5 CRISPR array Location: 116083-116374 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 116083-116374 bp Num of repeats: 5 Spacers: s1-s4 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 116083-116374 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)