CRISPRone

CRISPRone report for GCA_004790695.1_ASM479069v1

♦ Seq 1: SMZF01000006.1 Pseudomonas aeruginosa strain NUBRI-P, whole genome shotgun sequence

⇒Summary: seq-len = 295514 bp; # of CRISPR array = 3; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 103464-114218 bp Zoom in on locus 1 x6 x5 x14 CRISPR array Location: 103464-103798 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 103464-103798 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 103892-104165 bp Num of repeats: 5 Spacers: s6-s9 CRISPR array Location: 103892-104165 bp Num of repeats: 5 Spacers: s6-s9 Gene: cd09641:cas3HD Type: Type-I Location: 104937-107618 bp Gene: pfam09481:cas8e Type: Subtype-I-E Location: 107621-109189 bp Gene: cd09731:cse2gr11 Type: Subtype-I-E Location: 109186-109716 bp Gene: pfam09344:cas7 Type: Subtype-I-E Location: 109726-110868 bp Gene: cd09756:cas5 Type: Subtype-I-E Location: 110870-111532 bp Gene: pfam08798:cas6e Type: other Location: 111507-112118 bp Gene: cd09719:cas1 Type: universal Location: 112145-112384 bp Gene: COG1518:cas1 Type: universal Location: 112433-113035 bp Gene: pfam09707:cas2 Type: universal Location: 113032-113331 bp CRISPR array Location: 113396-114218 bp Num of repeats: 14 Spacers: s10-s22 CRISPR array Location: 113396-114218 bp Num of repeats: 14 Spacers: s10-s22 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 103464-103798 bp]: array | spacers
           [Locus range 103892-104165 bp]: array | spacers
           [Locus range 113396-114218 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)