CRISPRone

CRISPRone report for GCA_004796035.1_ASM479603v1

♦ Seq 1: SEIH01001453.1 Pseudomonas aeruginosa strain 4 scaffold_1452, whole genome shotgun sequence

⇒Summary: seq-len = 1491 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 941-1492 bp Zoom in on locus 1 x6 x3 CRISPR array Location: 941-1269 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 941-1269 bp Num of repeats: 6 Spacers: s1-s5 CRISPR array Location: 1344-1492 bp Num of repeats: 3 Spacers: s6-s7 CRISPR array Location: 1344-1492 bp Num of repeats: 3 Spacers: s6-s7 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 941-1269 bp]: array | spacers
           [Locus range 1344-1492 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SEIH01000862.1 Pseudomonas aeruginosa strain 4 scaffold_861, whole genome shotgun sequence

⇒Summary: seq-len = 1950 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 2-1949 bp Zoom in on locus 1 Gene: pfam09614:cas5f Type: Subtype-I-F Location: 2-472 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 483-1511 bp Gene: cd09739:cas6f Type: other Location: 1515-1949 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SEIH01001066.1 Pseudomonas aeruginosa strain 4 scaffold_1065, whole genome shotgun sequence

⇒Summary: seq-len = 1629 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 524-1631 bp Zoom in on locus 1 x19 CRISPR array Location: 524-1631 bp Num of repeats: 19 Spacers: s1-s18 CRISPR array Location: 524-1631 bp Num of repeats: 19 Spacers: s1-s18 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 524-1631 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SEIH01001780.1 Pseudomonas aeruginosa strain 4 scaffold_1779, whole genome shotgun sequence

⇒Summary: seq-len = 883 bp; # of CRISPR array = 0; # of cas gene = 1  NA .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 138-881 bp Zoom in on locus 1 Gene: COG1518:cas1 Type: universal Location: 138-881 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SEIH01000279.1 Pseudomonas aeruginosa strain 4 scaffold_278, whole genome shotgun sequence

⇒Summary: seq-len = 4111 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 3804-4112 bp Zoom in on locus 1 x3 x2 CRISPR array Location: 3804-3952 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 3804-3952 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 4024-4112 bp Num of repeats: 2 Spacers: s3-s3 CRISPR array Location: 4024-4112 bp Num of repeats: 2 Spacers: s3-s3 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 3804-3952 bp]: array | spacers
           [Locus range 4024-4112 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)