CRISPRone

CRISPRone report for GCA_004796075.1_ASM479607v1

♦ Seq 1: SEIA01000651.1 Pseudomonas aeruginosa strain 81 scaffold_650, whole genome shotgun sequence

⇒Summary: seq-len = 1667 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 6-1293 bp Zoom in on locus 1 x22 CRISPR array Location: 6-1293 bp Num of repeats: 22 Spacers: s1-s21 CRISPR array Location: 6-1293 bp Num of repeats: 22 Spacers: s1-s21 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 6-1293 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SEIA01000053.1 Pseudomonas aeruginosa strain 81 scaffold_52, whole genome shotgun sequence

⇒Summary: seq-len = 15602 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1633-2381 bp Zoom in on locus 1 x13 CRISPR array Location: 1633-2381 bp Num of repeats: 13 Spacers: s1-s12 CRISPR array Location: 1633-2381 bp Num of repeats: 13 Spacers: s1-s12 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 1633-2381 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SEIA01000096.1 Pseudomonas aeruginosa strain 81 scaffold_95, whole genome shotgun sequence

⇒Summary: seq-len = 15882 bp; # of CRISPR array = 2; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 5-10492 bp Zoom in on locus 1 x3 x24 CRISPR array Location: 5-154 bp Num of repeats: 3 Spacers: s1-s2 CRISPR array Location: 5-154 bp Num of repeats: 3 Spacers: s1-s2 Gene: cd09718:cas1 Type: universal Location: 414-1388 bp Gene: COG1203:cas3 Type: Type-I Location: 1385-4615 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 5026-6327 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 6314-7297 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 7308-8336 bp Gene: cd09739:cas6f Type: other Location: 8340-8903 bp CRISPR array Location: 9088-10492 bp Num of repeats: 24 Spacers: s3-s25 CRISPR array Location: 9088-10492 bp Num of repeats: 24 Spacers: s3-s25 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 5-154 bp]: array | spacers
           [Locus range 9088-10492 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)