CRISPRone

CRISPRone report for GCA_005049035.1_ASM504903v1

♦ Seq 1: SUNG01000035.1 Pseudomonas aeruginosa strain Pyo5 Pyo5_S67_R1__paired__contig_35, whole genome shotgun sequence

⇒Summary: seq-len = 176699 bp; # of CRISPR array = 3; # of cas gene = 6  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 34716-45607 bp Zoom in on locus 1 x9 x6 x23 CRISPR array Location: 34716-35224 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 34716-35224 bp Num of repeats: 9 Spacers: s1-s8 CRISPR array Location: 35358-35686 bp Num of repeats: 6 Spacers: s9-s13 CRISPR array Location: 35358-35686 bp Num of repeats: 6 Spacers: s9-s13 Gene: cd09739:cas6f Type: other Location: 35869-36432 bp Gene: pfam09615:cas7f Type: Subtype-I-F Location: 36436-37464 bp Gene: cd09736:cas5f Type: Subtype-I-F Location: 37475-38458 bp Gene: pfam09611:cas8f Type: Subtype-I-F Location: 38445-39749 bp Gene: COG1203:cas3 Type: Type-I Location: 39807-43037 bp Gene: cd09718:cas1 Type: universal Location: 43034-44008 bp CRISPR array Location: 44260-45607 bp Num of repeats: 23 Spacers: s14-s35 CRISPR array Location: 44260-45607 bp Num of repeats: 23 Spacers: s14-s35 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 34716-35224 bp]: array | spacers
           [Locus range 35358-35686 bp]: array | spacers
           [Locus range 44260-45607 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SUNG01000087.1 Pseudomonas aeruginosa strain Pyo5 Pyo5_S67_R1__paired__contig_87, whole genome shotgun sequence

⇒Summary: seq-len = 63253 bp; # of CRISPR array = 1; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 559-766 bp Zoom in on locus 1 x4 CRISPR array Location: 559-766 bp Num of repeats: 4 Spacers: s1-s3 CRISPR array Location: 559-766 bp Num of repeats: 4 Spacers: s1-s3 Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 559-766 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SUNG01000012.1 Pseudomonas aeruginosa strain Pyo5 Pyo5_S67_R1__paired__contig_12, whole genome shotgun sequence

⇒Summary: seq-len = 91588 bp; # of CRISPR array = 0; # of cas gene = 3  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 10751-17539 bp Zoom in on locus 1 Gene: cd09696:cas3 Type: Subtype-I-U Location: 10751-13972 bp Gene: pfam13280:WYL Type: other Location: 13985-14893 bp Gene: unk Type: unknown Location: 15173-16063 bp Gene: unk Type: unknown Location: 16198-16515 bp Gene: mkCas0115:csx3 Type: other Location: 16508-17539 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SUNG01000069.1 Pseudomonas aeruginosa strain Pyo5 Pyo5_S67_R1__paired__contig_69, whole genome shotgun sequence

⇒Summary: seq-len = 49736 bp; # of CRISPR array = 0; # of cas gene = 4  (type IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 4282-14143 bp Zoom in on locus 1 Gene: mkCas0115:csx3 Type: other Location: 4282-5994 bp Gene: pfam13280:WYL Type: other Location: 6053-7069 bp Gene: unk Type: unknown Location: 8033-8272 bp Gene: unk Type: unknown Location: 8341-8571 bp Gene: unk Type: unknown Location: 8830-9363 bp Gene: pfam13280:WYL Type: other Location: 9378-10253 bp Gene: unk Type: unknown Location: 10303-10671 bp Gene: unk Type: unknown Location: 10737-11384 bp Gene: COG1199:DinG Type: Subtype-IV-A Location: 11777-14143 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)