CRISPRone

CRISPRone report for GCA_005305005.1_ASM530500v1

♦ Seq 1: CP040127.1 Pseudomonas aeruginosa strain PA298 chromosome, complete genome

⇒Summary: seq-len = 6539894 bp; # of CRISPR array = 1; # of cas gene = 10  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 1090230-1100815 bp 2 Locus 2: 5296437-5306647 bp Zoom in on locus 1 Zoom in on locus 2 x37 Gene: COG0640:csa3 Type: Subtype-I-A Location: 1090230-1091099 bp Gene: pfam00078:RT Type: other Location: 1096008-1097276 bp Gene: unk Type: unknown Location: 1097426-1097824 bp Gene: unk Type: unknown Location: 1098008-1098187 bp Gene: cls000170:cas4 Type: Type-I Location: 1099271-1100815 bp CRISPR array Location: 5296437-5298855 bp Num of repeats: 37 Spacers: s1-s36 CRISPR array Location: 5296437-5298855 bp Num of repeats: 37 Spacers: s1-s36 Gene: cd09725:cas2 Type: universal Location: 5299037-5299327 bp Gene: cd09721:cas1 Type: universal Location: 5299337-5300377 bp Gene: pfam01930:cas4 Type: Type-I Location: 5300381-5301013 bp Gene: cd09689:cas7 Type: Subtype-I-C Location: 5301032-5301901 bp Gene: cd09757:cas8c Type: Subtype-I-C Location: 5301898-5303691 bp Gene: cd09752:cas5 Type: Subtype-I-C Location: 5303688-5304362 bp Gene: cd09641:cas3HD Type: Type-I Location: 5304413-5306647 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 5296437-5298855 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)