CRISPRone

CRISPRone report for GCA_005502205.1_ASM550220v1

♦ Seq 1: SRMH01000005.1 Clostridioides difficile strain CD-B18-123 NODE005, whole genome shotgun sequence

⇒Summary: seq-len = 277155 bp; # of CRISPR array = 1; # of cas gene = 9  (type I) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 249101-260543 bp Zoom in on locus 1 x29 CRISPR array Location: 249101-250978 bp Num of repeats: 29 Spacers: s1-s28 CRISPR array Location: 249101-250978 bp Num of repeats: 29 Spacers: s1-s28 Gene: cd09725:cas2 Type: universal Location: 251162-251428 bp Gene: cd09722:cas1 Type: universal Location: 251431-252411 bp Gene: pfam01930:cas4 Type: Type-I Location: 252414-252932 bp Gene: COG1203:cas3 Type: Type-I Location: 252980-255301 bp Gene: cd09658:cas5 Type: Subtype-I-B Location: 255312-256013 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 256015-256929 bp Gene: cd09665:cas8b2 Type: Subtype-I-B Location: 256931-258808 bp Gene: pfam01881:cas6 Type: other Location: 258814-259608 bp Gene: pfam13280:WYL Type: other Location: 259629-260543 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 249101-250978 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 2: SRMH01000003.1 Clostridioides difficile strain CD-B18-123 NODE003, whole genome shotgun sequence

⇒Summary: seq-len = 469257 bp; # of CRISPR array = 3; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 31279-31971 bp 2 Locus 2: 113497-113722 bp 3 Locus 3: 273396-273818 bp Zoom in on locus 1 x11 Zoom in on locus 2 x4 Zoom in on locus 3 x7 CRISPR array Location: 31279-31971 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 31279-31971 bp Num of repeats: 11 Spacers: s1-s10 CRISPR array Location: 113497-113722 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 113497-113722 bp Num of repeats: 4 Spacers: s11-s13 CRISPR array Location: 273396-273818 bp Num of repeats: 7 Spacers: s14-s19 CRISPR array Location: 273396-273818 bp Num of repeats: 7 Spacers: s14-s19 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 31279-31971 bp]: array | spacers
           [Locus range 113497-113722 bp]: array | spacers
           [Locus range 273396-273818 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 3: SRMH01000004.1 Clostridioides difficile strain CD-B18-123 NODE004, whole genome shotgun sequence

⇒Summary: seq-len = 363222 bp; # of CRISPR array = 0; # of cas gene = 6  (type I, III) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 166043-173918 bp Zoom in on locus 1 Gene: mkCas0101:csm2gr11 Type: Subtype-III-D Location: 166043-167152 bp Gene: pfam01881:cas6 Type: other Location: 167411-168148 bp Gene: pfam09706:cas8b2 Type: Subtype-I-B Location: 168153-169628 bp Gene: cd09687:cas7 Type: Subtype-I-B Location: 169648-170661 bp Gene: cd09693:cas5 Type: Type-I Location: 170677-171483 bp Gene: cd09641:cas3HD Type: Type-I Location: 171510-173918 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 4: SRMH01000001.1 Clostridioides difficile strain CD-B18-123 NODE001, whole genome shotgun sequence

⇒Summary: seq-len = 526102 bp; # of CRISPR array = 7; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 278431-279521 bp 2 Locus 2: 297593-298411 bp 3 Locus 3: 332978-339076 bp 4 Locus 4: 381286-381448 bp Zoom in on locus 1 x17 Zoom in on locus 2 x13 Zoom in on locus 3 x6 x4 x3 x8 Zoom in on locus 4 x3 CRISPR array Location: 278431-279521 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 278431-279521 bp Num of repeats: 17 Spacers: s1-s16 CRISPR array Location: 297593-298411 bp Num of repeats: 13 Spacers: s17-s28 CRISPR array Location: 297593-298411 bp Num of repeats: 13 Spacers: s17-s28 CRISPR array Location: 332978-333335 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 332978-333335 bp Num of repeats: 6 Spacers: s29-s33 CRISPR array Location: 336168-336394 bp Num of repeats: 4 Spacers: s34-s36 CRISPR array Location: 336168-336394 bp Num of repeats: 4 Spacers: s34-s36 CRISPR array Location: 336628-336789 bp Num of repeats: 3 Spacers: s37-s38 CRISPR array Location: 336628-336789 bp Num of repeats: 3 Spacers: s37-s38 CRISPR array Location: 338588-339076 bp Num of repeats: 8 Spacers: s39-s45 CRISPR array Location: 338588-339076 bp Num of repeats: 8 Spacers: s39-s45 CRISPR array Location: 381286-381448 bp Num of repeats: 3 Spacers: s46-s47 CRISPR array Location: 381286-381448 bp Num of repeats: 3 Spacers: s46-s47 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 278431-279521 bp]: array | spacers
           [Locus range 297593-298411 bp]: array | spacers
           [Locus range 332978-333335 bp]: array | spacers
           [Locus range 336168-336394 bp]: array | spacers
           [Locus range 336628-336789 bp]: array | spacers
           [Locus range 338588-339076 bp]: array | spacers
           [Locus range 381286-381448 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)

♦ Seq 5: SRMH01000002.1 Clostridioides difficile strain CD-B18-123 NODE002, whole genome shotgun sequence

⇒Summary: seq-len = 481654 bp; # of CRISPR array = 2; # of cas gene = 0 (Questionable CRISPR.)

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 192312-192805 bp 2 Locus 2: 400979-401073 bp Zoom in on locus 1 x8 Zoom in on locus 2 x2 CRISPR array Location: 192312-192805 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 192312-192805 bp Num of repeats: 8 Spacers: s1-s7 CRISPR array Location: 400979-401073 bp Num of repeats: 2 Spacers: s8-s8 CRISPR array Location: 400979-401073 bp Num of repeats: 2 Spacers: s8-s8 Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒CRISPR arrays :
           [Locus range 192312-192805 bp]: array | spacers
           [Locus range 400979-401073 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)