CRISPRone

CRISPRone report for GCA_005706655.1_ASM570665v1

♦ Seq 1: CP036555.1 Bacteroides fragilis strain CCUG4856T chromosome, complete genome

⇒Summary: seq-len = 5205133 bp; # of CRISPR array = 2; # of cas gene = 9  (type I, II) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 392239-401111 bp 2 Locus 2: 3934213-3936529 bp 3 Locus 3: 4922342-4925955 bp Zoom in on locus 1 x27 Zoom in on locus 2 x9 Zoom in on locus 3 CRISPR array Location: 392239-394276 bp Num of repeats: 27 Spacers: s1-s26 CRISPR array Location: 392239-394276 bp Num of repeats: 27 Spacers: s1-s26 Gene: pfam09827:cas2 Type: Subtype-II-C Location: 394385-394717 bp Gene: cd09720:cas1 Type: Subtype-II-C Location: 394721-395653 bp Gene: unk Type: unknown Location: 395773-396081 bp Gene: unk Type: unknown Location: 396148-396672 bp Gene: cd09643:cas9 Type: Subtype-II-C Location: 396688-400998 bp antiRepeat Location: 401066-401111 bp Strand: - Match length: 26 bp Mismatch: 21 bp CRISPR array Location: 3934213-3934755 bp Num of repeats: 9 Spacers: s27-s34 CRISPR array Location: 3934213-3934755 bp Num of repeats: 9 Spacers: s27-s34 Gene: cd09725:cas2 Type: universal Location: 3934968-3935231 bp Gene: cd09722:cas1 Type: universal Location: 3935234-3935473 bp Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 3935466-3935846 bp Gene: cd09652:cas6 Type: other Location: 3935858-3936529 bp Gene: cd09692:cas5 Type: Subtype-I-B Location: 4922342-4923010 bp Gene: unk Type: unknown Location: 4923013-4923786 bp Gene: unk Type: unknown Location: 4923794-4925059 bp Gene: pfam13280:WYL Type: other Location: 4925056-4925955 bp Sorry, your browser does not support inline SVG.

Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 392239-394276 bp]: array | spacers
           [Locus range 3934213-3934755 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)